MIAP KNIME Image Processing Workshop

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KNIME Analytics Platform is the open source software for creating data science applications and services. Intuitive, open, and continuously integrating new developments, KNIME makes understanding data and designing data science workflows and reusable components accessible to everyone.

The KNIME Image Processing extensions for KNIME Analytics Platform integrate well-known open source tools from the field of bioimage analysis (e.g. ImageJ2/FIJI, ImgLib2, OMERO, Ilastik, BigDataViewer or CellProfiler). Leveraging the functionality that is provided by KNIME Analytics Platform, users can design complex end-to-end image analysis workflows, capable of processing multi-dimensional images and videos at a large scale through to the subsequent machine learning, statistical analysis, or visualization.

No previous knowledge or experience with KNIME required to join the workshop. Basic knowledge and experience in image processing required to join the workshop. If you already got in touch with Image Processing / Analysis and looking for a solution to get the most out of your data in automated workflows and image analysis pipelines and at the same time integrating into well-established open source tools, this workshop is designed for you.

This workshop is equally suited for undergraduate students as well as Ph.D. students, postdocs, staff scientists and technicians.

This workshop will be held by the well-known image analysis expert (NEUBIAS, KNIME) Stefan Helfrich from the KNIME team.

The registration fee of 50 € covers lunch (finger food), refreshments and coffee & tea with some snacks and sweets for all days of the workshop.

Please note: We highly encourage participants to bring their own laptop to the workshop. We will provide 11 workstations free to use during the workshop in case some participants can’t bring their own laptop along. If you can’t bring your own laptop, please contact us in advance so we can make sure that you can access one of the workstations.


Albert-Ludwigs University Freiburg
Microscopy and Image Analysis Platform (MIAP)
Life Imaging Center (LIC)
Center for Biological Systems Analysis (ZBSA)
Habsburgerstr. 49
79104 Freiburg im Breisgau


Stefan Helfrich (KNIME)
e-mail: stefan.helfrich@knime.com


Microscopy and Image Analysis Platform (MIAP)

Tobias Wernet
e-mail: tobias.wernet@zbsa.uni-freiburg.de

Sylvia Olberg
e-mail: sylvia.olberg@zbsa.uni-freiburg.de

web: https://miap.eu
e-mail: info@miap.eu

Workshop Details

May 22nd – 23rd 2019