The LIC was successful in the DFG Call for “Core Facilities and Networks 2015” Freiburg has been awarded a grant over three years for realization of the Microscopy and Image Analysis Platform Freiburg (MIAP-Freiburg).
MIAP-Freiburg will establish a series of interdisciplinary seminars and workshops covering in great depth special topics in microscopy and related fields. The activities, which are arranged as a cooperation of academia and industry, are targeted towards scientific users of microscopical techniques in the life and material sciences, computer scientists in the area of image analysis and software development, engineers and physicists from basic research, instrument developers in the whole area of microscopy and finally staff from imaging facilities world-wide.
Moreover the LIC application as an “Advanced Light Microscopy Multi Modal Single Sited Node” within EuroBioImaging was excellently reviewed by an independent International Evaluation Board and received the final ranking: Highly Recommended Expression of Interest for Euro-BioImaging Node.
Overview of scientific publications from research groups done by using LIC infrastructure and support
The chart is dynamically updated during our accounting procedures and therefore reflects the most recent publication statistics of the LIC facility.
Latest LIC User Statistics
We are happy to share the latest user statistics of the LIC facility within the MIAP framework. The charts are dynamically updated during our accounting procedures and therefore reflect the most recent user statistics of LIC.
Publications
Year
Author
Titel
Journal
doi.org/
2008
Fritsch A, Loeckermann S, Kern JS, Braun A, Bösl MR, Bley TA, Schumann H, von Elverfeldt D, Paul D, Erlacher M, Berens von Rautenfeld D, Hausser I, Fässler R, Bruckner-Tuderman L.
A hypomorphic mouse model of dystrophic epidermolysis bullosa reveals mechanisms of disease and response to fibroblast therapy.
J Clin Invest. 2008 May;118(5):1669-79.
2008
Palme K, Nagy F.
A new gene for auxin synthesis.
Cell. 2008 Apr 4;133(1):31-2.
2008
Qudeimat E, Faltusz AM, Wheeler G, Lang D, Holtorf H, Brownlee C, Reski R, Frank W.
A PIIB-type Ca2+-ATPase is essential for stress adaptation in Physcomitrella patens.
Proc Natl Acad Sci U S A. 2008 Dec 9;105(49):19555-60.
2008
Haeberle S, Naegele L, Burger R, von Stetten F, Zengerle R, Ducrée J.
Alginate bead fabrication and encapsulation of living cells under centrifugally induced artificial gravity conditions.
J Microencapsul. 2008 Jun;25(4):267-74.
2008
Lachnit M, Kur E, Driever W.
Alterations of the cytoskeleton in all three embryonic lineages contribute to the epiboly defect of Pou5f1/Oct4 deficient MZspg zebrafish embryos.
Apoptosis induced by Semliki Forest virus is RNA replication dependent and mediated via Bak.
Cell Death Differ. 2008 Sep;15(9):1396-407.
2008
Teale WD, Ditengou FA, Dovzhenko AD, Li X, Molendijk AM, Ruperti B, Paponov I, Palme K.
Auxin as a model for the integration of hormonal signal processing and transduction.
Mol Plant. 2008 Mar;1(2):229-37.
2008
Paponov IA, Paponov M, Teale W, Menges M, Chakrabortee S, Murray JA, Palme K.
Comprehensive transcriptome analysis of auxin responses in Arabidopsis.
Mol Plant. 2008 Mar;1(2):321-37.
2008
Feng S, Martinez C, Gusmaroli G, Wang Y, Zhou J, Wang F, Chen L, Yu L, Iglesias-Pedraz JM, Kircher S, Schäfer E, Fu X, Fan LM, Deng XW.
Coordinated regulation of Arabidopsis thaliana development by light and gibberellins.
Nature. 2008 Jan 24;451(7177):475-9.
2008
Loges NT, Olbrich H, Fenske L, Mussaffi H, Horvath J, Fliegauf M, Kuhl H, Baktai G, Peterffy E, Chodhari R, Chung EM, Rutman A, O’Callaghan C, Blau H, Tiszlavicz L, Voelkel K, Witt M, Zietkiewicz E, Neesen J, Reinhardt R, Mitchison HM, Omran H.
DNAI2 mutations cause primary ciliary dyskinesia with defects in the outer dynein arm.
Am J Hum Genet. 2008 Nov;83(5):547-58.
2008
Reichenbach B, Delalande JM, Kolmogorova E, Prier A, Nguyen T, Smith CM, Holzschuh J, Shepherd IT
Endoderm-derived Sonic hedgehog and mesoderm Hand2 expression are required for enteric nervous system development in zebrafish.
Dev Biol. 2008 Jun 1;318(1):52-64.
2008
Kotsis F, Nitschke R, Doerken M, Walz G, Kuehn EW.
Flow modulates centriole movements in tubular epithelial cells.
Pflugers Arch. 2008 Sep;456(6):1025-35.
2008
Schäfer T, Pütz M, Lienkamp S, Ganner A, Bergbreiter A, Ramachandran H, Gieloff V, Gerner M, Mattonet C, Czarnecki PG, Sayer JA, Otto EA, Hildebrandt F, Kramer-Zucker A, Walz G.
Genetic and physical interaction between the NPHP5 and NPHP6 gene products.
Hum Mol Genet. 2008 Dec 1;17(23):3655-62.
2008
Simons M, Huber TB.
It’s not all about nephrin.
Kidney Int. 2008 Mar;73(6):671-3.
2008
Schmitt-Graeff AH, Teo SS, Olschewski M, Schaub F, Haxelmans S, Kirn A, Reinecke P, Germing U, Skoda RC.
JAK2V617F mutation status identifies subtypes of refractory anemia with ringed sideroblasts associated with marked thrombocytosis.
Haematologica. 2008 Jan;93(1):34-40.
2008
Duning K, Schurek EM, Schlüter M, Bayer M, Reinhardt HC, Schwab A, Schaefer L, Benzing T, Schermer B, Saleem MA, Huber TB, Bachmann S, Kremerskothen J, Weide T, Pavenstädt H.
KIBRA modulates directional migration of podocytes.
J Am Soc Nephrol. 2008 Oct;19(10):1891-903.
2008
Bergmann C, Fliegauf M, Brüchle NO, Frank V, Olbrich H, Kirschner J, Schermer B, Schmedding I, Kispert A, Kränzlin B, Nürnberg G, Becker C, Grimm T, Girschick G, Lynch SA, Kelehan P, Senderek J, Neuhaus TJ, Stallmach T, Zentgraf H, Nürnberg P, Gretz N, Lo C, Lienkamp S, Schäfer T, Walz G, Benzing T, Zerres K, Omran H.
Loss of nephrocystin-3 function can cause embryonic lethality, Meckel-Gruber-like syndrome, situs inversus, and renal-hepatic-pancreatic dysplasia.
Am J Hum Genet. 2008 Apr;82(4):959-70.
2008
Ditengou FA, Teale WD, Kochersperger P, Flittner KA, Kneuper I, van der Graaff E, Nziengui H, Pinosa F, Li X, Nitschke R, Laux T, Palme K.
Mechanical induction of lateral root initiation in Arabidopsis thaliana.
Proc Natl Acad Sci U S A. 2008 Dec 2;105(48):18818-23.
2008
Huber TB.
Molecular pathogenesis of proteinuria.
Dtsch Med Wochenschr. 2008 May;133(18):954-8.
2008
Qi J, Qian Q, Bu Q, Li S, Chen Q, Sun J, Liang W, Zhou Y, Chu C, Li X, Ren F, Palme K, Zhao B, Chen J, Chen M, Li C.
Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport.
Pericytes in the mature chorioallantoic membrane capillary plexus contain desmin and alpha-smooth muscle actin: relevance for non-sprouting angiogenesis.
Histochem Cell Biol. 2008 Nov;130(5):1027-40.
2008
Huber K, Franke A, Brühl B, Krispin S, Ernsberger U, Schober A, von Bohlen und Halbach O, Rohrer H, Kalcheim C, Unsicker K.
Persistent expression of BMP-4 in embryonic chick adrenal cortical cells and its role in chromaffin cell development.
Neural Dev. 2008 Oct 22;3:28.
2008
Akilesh S, Huber TB, Wu H, Wang G, Hartleben B, Kopp JB, Miner JH, Roopenian DC, Unanue ER, Shaw AS.
Podocytes use FcRn to clear IgG from the glomerular basement membrane.
Proc Natl Acad Sci U S A. 2008 Jan 22;105(3):967-72.
2008
Marza E, Long T, Saiardi A, Sumakovic M, Eimer S, Hall DH, Lesa GM.
Schwabe GC, Hoffmann K, Loges NT, Birker D, Rossier C, de Santi MM, Olbrich H, Fliegauf M, Failly M, Liebers U, Collura M, Gaedicke G, Mundlos S, Wahn U, Blouin JL, Niggemann B, Omran H, Antonarakis SE, Bartoloni L.
Primary ciliary dyskinesia associated with normal axoneme ultrastructure is caused by DNAH11 mutations.
Hum Mutat. 2008 Feb;29(2):289-98.
2008
Webb AE, Driever W, Kimelman D.
Psoriasis regulates epidermal development in zebrafish.
Dev Dyn. 2008 Apr;237(4):1153-64.
2008
Resch-Genger U, Grabolle M, Cavaliere-Jaricot S, Nitschke R, Nann T.
Quantum dots versus organic dyes as fluorescent labels.
Nat Methods. 2008 Sep;5(9):763-75.
2008
Isken A, Golczak M, Oberhauser V, Hunzelmann S, Driever W, Imanishi Y, Palczewski K, von Lintig J.
RBP4 disrupts vitamin A uptake homeostasis in a STRA6-deficient animal model for Matthew-Wood syndrome.
Cell Metab. 2008 Mar;7(3):258-68.
2008
Neumann-Haefelin E, Qi W, Finkbeiner E, Walz G, Baumeister R, Hertweck M.
SHC-1/p52Shc targets the insulin/IGF-1 and JNK signaling pathways to modulate life span and stress response in C. elegans.
Genes Dev. 2008 Oct 1;22(19):2721-35.
2008
Lichtenauer UD, Shapiro I, Geiger K, Quinkler M, Fassnacht M, Nitschke R, Rückauer KD, Beuschlein F.
Side population does not define stem cell-like cancer cells in the adrenocortical carcinoma cell line NCI h295R.
Endocrinology. 2008 Mar;149(3):1314-22.
2008
Barrionuevo F, Naumann A, Bagheri-Fam S, Speth V, Taketo MM, Scherer G, Neubüser A.
Sox9 is required for invagination of the otic placode in mice.
Dev Biol. 2008 May 1;317(1):213-24.
2008
Khraiwesh B, Ossowski S, Weigel D, Reski R, Frank W.
Specific gene silencing by artificial MicroRNAs in Physcomitrella patens: an alternative to targeted gene knockouts.
Plant Physiol. 2008 Oct;148(2):684-93.
2008
Men S, Boutté Y, Ikeda Y, Li X, Palme K, Stierhof YD, Hartmann MA, Moritz T, Grebe M.
Walter D, Schmich K, Vogel S, Pick R, Kaufmann T, Hochmuth FC, Haber A, Neubert K, McNelly S, von Weizsäcker F, Merfort I, Maurer U, Strasser A, Borner C.
Switch from type II to I Fas/CD95 death signaling on in vitro culturing of primary hepatocytes.
N. Wangler, M. Welsche, M. Laufer, A. Träger, N. Paust, M. Thielen, O. Sobolev, G. Roth, R. Zengerle, J. Steigert
Predictable and defined microgradients in liquid environment for chemical single cell stimulation
Proc. of the Thirteenth International Conference on Miniaturized Systems for Chemistry and Life Sciences (µTAS), Jeju, Korea, November 1-5, 2009, pp. 679 – 681
2009
Mitschke J, Fuss J, Blum T, Höglund A, Reski R, Kohlbacher O, Rensing SA.
Prediction of dual protein targeting to plant organelles.
New Phytol. 2009;183(1):224-35.
2009
Karpinar DP, Balija MB, Kügler S, Opazo F, Rezaei-Ghaleh N, Wender N, Kim HY, Taschenberger G, Falkenburger BH, Heise H, Kumar A, Riedel D, Fichtner L, Voigt A, Braus GH, Giller K, Becker S, Herzig A, Baldus M, Jäckle H, Eimer S, Schulz JB, Griesinger C, Zweckstetter M.
Pre-fibrillar alpha-synuclein variants with impaired beta-structure increase neurotoxicity in Parkinson’s disease models.
EMBO J. 2009 Oct 21;28(20):3256-68.
2009
Strelau J, Strzelczyk A, Rusu P, Bendner G, Wiese S, Diella F, Altick AL, von Bartheld CS, Klein R, Sendtner M, Unsicker K.
Progressive postnatal motoneuron loss in mice lacking GDF-15.
J Neurosci. 2009 Oct 28;29(43):13640-8.
2009
M. Welsche, N. Wangler, M. Laufer, A. Träger, M. Thielen, M. Daub, R. Zengerle, J. Steigert
Rapid single cell transfection by localised and discreate release of DNA-lipid nanoemulsions
Proc. of the Thirteenth International Conference on Miniaturized Systems for Chemistry and Life Sciences (µTAS), Jeju, Korea, November 1-5, 2009, pp. 1802 – 1804
2009
Mallory AC, Hinze A, Tucker MR, Bouché N, Gasciolli V, Elmayan T, Lauressergues D, Jauvion V, Vaucheret H, Laux T.
Redundant and specific roles of the ARGONAUTE proteins AGO1 and ZLL in development and small RNA-directed gene silencing.
PLoS Genet. 2009 Sep;5(9):e1000646.
2009
Sibbe M, Förster E, Basak O, Taylor V, Frotscher M.
Reelin and Notch1 cooperate in the development of the dentate gyrus.
J Neurosci. 2009 Jul 1;29(26):8578-85.
2009
Chai X, Förster E, Zhao S, Bock HH, Frotscher M.
Reelin stabilizes the actin cytoskeleton of neuronal processes by inducing n-cofilin phosphorylation at serine3.
J Neurosci. 2009 Jan 7;29(1):288-99.
2009
Ganner A, Lienkamp S, Schäfer T, Romaker D, Wegierski T, Park TJ, Spreitzer S, Simons M, Gloy J, Kim E, Wallingford JB, Walz G.
Regulation of ciliary polarity by the APC/C.
Proc Natl Acad Sci U S A. 2009 Oct 20;106(42):17799-804.
2009
Wiegreffe C, Christ B, Huang R, Scaal M.
Remodeling of aortic smooth muscle during avian embryonic development.
Dev Dyn. 2009 Mar;238(3):624-31.
2009
Frotscher M, Chai X, Bock HH, Haas CA, Förster E, Zhao S.
Role of Reelin in the development and maintenance of cortical lamination.
J Neural Transm. 2009 Nov;116(11):1451-5.
2009
Wang Q, Ronneberger O, Burkhardt H.
Rotational invariance based on Fourier analysis in polar and spherical coordinates.
IEEE Trans Pattern Anal Mach Intell. 2009 Sep;31(9):1715-22.
2009
Kugler A, Köhler B, Palme K, Wolff P, Dietrich P.
Salt-dependent regulation of a CNG channel subfamily in Arabidopsis.
BMC Plant Biol. 2009 Nov 27;9:140.
2009
Skouloudaki K, Puetz M, Simons M, Courbard JR, Boehlke C, Hartleben B, Engel C, Moeller MJ, Englert C, Bollig F, Schäfer T, Ramachandran H, Mlodzik M, Huber TB, Kuehn EW, Kim E, Kramer-Zucker A, Walz G.
Scribble participates in Hippo signaling and is required for normal zebrafish pronephros development.
Proc Natl Acad Sci U S A. 2009 May 26;106(21):8579-84.
2009
Weide T, Huber TB.
Signaling at the slit: podocytes chat by synaptic transmission.
J Am Soc Nephrol. 2009 Sep;20(9):1862-4.
2009
Barrionuevo F, Georg I, Scherthan H, Lécureuil C, Guillou F, Wegner M, Scherer G.
Testis cord differentiation after the sex determination stage is independent of Sox9 but fails in the combined absence of Sox9 and Sox8.
Dev Biol. 2009 Mar 15;327(2):301-12.
2009
Tromas A, Braun N, Muller P, Khodus T, Paponov IA, Palme K, Ljung K, Lee JY, Benfey P, Murray JA, Scheres B, Perrot-Rechenmann C.
The AUXIN BINDING PROTEIN 1 is required for differential auxin responses mediating root growth.
PLoS One. 2009 Sep 24;4(9):e6648.
2009
Felten J, Kohler A, Morin E, Bhalerao RP, Palme K, Martin F, Ditengou FA, Legué V.
The ectomycorrhizal fungus Laccaria bicolor stimulates lateral root formation in poplar and Arabidopsis through auxin transport and signaling.
The histidine kinases CYTOKININ-INDEPENDENT1 and ARABIDOPSIS HISTIDINE KINASE2 and 3 regulate vascular tissue development in Arabidopsis shoots.
Plant Cell. 2009 Jul;21(7):2008-21.
2009
Fischbach KF, Linneweber GA, Andlauer TF, Hertenstein A, Bonengel B, Chaudhary K.
The irre cell recognition module (IRM) proteins.
J Neurogenet. 2009;23(1-2):48-67.
2009
Shen ZJ, Esnault S, Schinzel A, Borner C, Malter JS.
The peptidyl-prolyl isomerase Pin1 facilitates cytokine-induced survival of eosinophils by suppressing Bax activation.
Nat Immunol. 2009 Mar;10(3):257-65.
2009
Haribaskar R, Pütz M, Schupp B, Skouloudaki K, Bietenbeck A, Walz G, Schäfer T.
The planar cell polarity (PCP) protein Diversin translocates to the nucleus to interact with the transcription factor AF9.
Biochem Biophys Res Commun. 2009 Sep 11;387(1):212-7.
2009
Wegierski T, Steffl D, Kopp C, Tauber R, Buchholz B, Nitschke R, Kuehn EW, Walz G, Köttgen M.
TRPP2 channels regulate apoptosis through the Ca2+ concentration in the endoplasmic reticulum.
EMBO J. 2009 Mar 4;28(5):490-9.
2009
Wegierski T, Lewandrowski U, Müller B, Sickmann A, Walz G.
Tyrosine phosphorylation modulates the activity of TRPV4 in response to defined stimuli.
J Biol Chem. 2009 Jan 30;284(5):2923-33.
2009
Sumakovic M, Hegermann J, Luo L, Husson SJ, Schwarze K, Olendrowitz C, Schoofs L, Richmond J, Eimer S.
UNC-108/RAB-2 and its effector RIC-19 are involved in dense core vesicle maturation in Caenorhabditis elegans.
J Cell Biol. 2009 Sep 21;186(6):897-914.
2009
Emmenlauer M, Ronneberger O, Ponti A, Schwarb P, Griffa A, Filippi A, Nitschke R, Driever W, Burkhardt H.
XuvTools: free, fast and reliable stitching of large 3D datasets.
J Microsc. 2009 Jan;233(1):42-60.
2009
Bader HL, Keene DR, Charvet B, Veit G, Driever W, Koch M, Ruggiero F.
Zebrafish collagen XII is present in embryonic connective tissue sheaths (fascia) and basement membranes.
Matrix Biol. 2009 Jan;28(1):32-43.
2009
Löhr H, Ryu S, Driever W.
Zebrafish diencephalic A11-related dopaminergic neurons share a conserved transcriptional network with neuroendocrine cell lineages.
Development. 2009 Mar;136(6):1007-17.
2010
Weiss A., Charbonnier E., Ellertsdóttir E., Wolf C., Schuh R., Pyrowolakis G.*, Affolter M.* (2010) *shared senior authorship
A conserved activation element in BMP signaling during Drosophila development.
Nat Struct Mol Biol. 2010 Jan;17(1):69-76.
2010
Neumann-Haefelin E, Kramer-Zucker A, Slanchev K, Hartleben B, Noutsou F, Martin K, Wanner N, Ritter A, Gödel M, Pagel P, Fu X, Müller A, Baumeister R, Walz G, Huber TB.
A model organism approach: defining the role of Neph proteins as regulators of neuron and kidney morphogenesis.
Hum Mol Genet. 2010 Jun 15;19(12):2347-59.
2010
Kiritsi D, Cosgarea I, Franzke CW, Schumann H, Oji V, Kohlhase J, Bruckner-Tuderman L, Has C
Acral peeling skin syndrome with TGM5 gene mutations may resemble epidermolysis bullosa simplex in young individuals.
J Invest Dermatol. 2010 Jun;130(6):1741-6.
2010
Rausenberger J, Hussong A, Kircher S, Kirchenbauer D, Timmer J, Nagy F, Schäfer E, Fleck C.
An integrative model for phytochrome B mediated photomorphogenesis: from protein dynamics to physiology.
PLoS One. 2010 May 19;5(5):e10721.
2010
Hartleben B, Gödel M, Meyer-Schwesinger C, Liu S, Ulrich T, Köbler S, Wiech T, Grahammer F, Arnold SJ, Lindenmeyer MT, Cohen CD, Pavenstädt H, Kerjaschki D, Mizushima N, Shaw AS, Walz G, Huber TB.
Autophagy influences glomerular disease susceptibility and maintains podocyte homeostasis in aging mice.
J Clin Invest. 2010 Apr;120(4):1084-96.
2010
Cui Y, Li X, Chen Q, He X, Yang Q, Zhang A, Yu X, Chen H, Liu N, Xie Q, Yang W, Zuo J, Palme K, Li W.
BLOS1, a putative BLOC-1 subunit, interacts with SNX1 and modulates root growth in Arabidopsis.
J Cell Sci. 2010 Nov 1;123(Pt 21):3727-33.
2010
Vuilleumier R., Springhorn A., Patterson L., Koidl S., Hammerschmidt M., Affolter M., Pyrowolakis G.
Control of Dpp morphogen distribution by a secreted feedback regulator.
Nat Cell Biol. 2010 Jun;12(6):611-7.
2010
Mahler J, Filippi A, Driever W.
DeltaA/DeltaD regulate multiple and temporally distinct phases of notch signaling during dopaminergic neurogenesis in zebrafish.
J Neurosci. 2010 Dec 8;30(49):16621-35.
2010
Kim GJ, Georg I, Scherthan H, Merkenschlager M, Guillou F, Scherer G, Barrionuevo F.
Dicer is required for Sertoli cell function and survival.
Int J Dev Biol. 2010;54(5):867-75.
2010
Boehlke C, Bashkurov M, Buescher A, Krick T, John AK, Nitschke R, Walz G, Kuehn EW.
Differential role of Rab proteins in ciliary trafficking: Rab23 regulates smoothened levels.
J Cell Sci. 2010 May 1;123(Pt 9):1460-7.
2010
Saur D, Ronneberger O, Kümmerer D, Mader I, Weiller C, Klöppel S.
Early functional magnetic resonance imaging activations predict language outcome after stroke.
Brain. 2010 Apr;133(Pt 4):1252-64.
2010
Nishie W, Lamer S, Schlosser A, Licarete E, Franzke CW, Hofmann SC, Jackow J, Sitaru C, Bruckner-Tuderman L.
Ectodomain shedding generates Neoepitopes on collagen XVII, the major autoantigen for bullous pemphigoid.
J Immunol. 2010 Oct 15;185(8):4938-47.
2010
Zechel S, Meinhardt A, Unsicker K, von Bohlen Und Halbach O.
Expression of leucine-rich-repeat-kinase 2 (LRRK2) during embryonic development.
Int J Dev Neurosci. 2010 Aug;28(5):391-9.
2010
Filippi A, Mahler J, Schweitzer J, Driever W.
Expression of the paralogous tyrosine hydroxylase encoding genes th1 and th2 reveals the full complement of dopaminergic and noradrenergic neurons in zebrafish larval and juvenile brain.
J Comp Neurol. 2010 Feb 15;518(4):423-38.
2010
Palágyi A, Terecskei K, Adám E, Kevei E, Kircher S, Mérai Z, Schäfer E, Nagy F, Kozma-Bognár L.
Functional analysis of amino-terminal domains of the photoreceptor phytochrome B.
Plant Physiol. 2010 Aug;153(4):1834-45.
2010
Kastenhuber E, Kratochwil CF, Ryu S, Schweitzer J, Driever W.
Genetic dissection of dopaminergic and noradrenergic contributions to catecholaminergic tracts in early larval zebrafish.
J Comp Neurol. 2010 Feb 15;518(4):439-58.
2010
Zhao S, Frotscher M.
Go or stop? Divergent roles of Reelin in radial neuronal migration.
Neuroscientist. 2010 Aug;16(4):421-34.
2010
Schlachter M, Reisert M, Herz C, Schlürmann F, Lassmann S, Werner M, Burkhardt H, Ronneberger O.
Harmonic filters for 3D multichannel data: rotation invariant detection of mitoses in colorectal cancer.
IEEE Trans Med Imaging. 2010 Aug;29(8):1485-95.
2010
Trevisan S, Pizzeghello D, Ruperti B, Francioso O, Sassi A, Palme K, Quaggiotti S, Nardi S.
Humic substances induce lateral root formation and expression of the early auxin-responsive IAA19 gene and DR5 synthetic element in Arabidopsis.
Plant Biol (Stuttg). 2010 Jul 1;12(4):604-14.
2010
Kamp F, Exner N, Lutz AK, Wender N, Hegermann J, Brunner B, Nuscher B, Bartels T, Giese A, Beyer K, Eimer S, Winklhofer KF, Haass C.
Inhibition of mitochondrial fusion by α-synuclein is rescued by PINK1, Parkin and DJ-1.
EMBO J. 2010 Oct 20;29(20):3571-89.
2010
Schneider S, Lenz D, Holzer M, Palme K, Süss R.
Intracellular FRET analysis of lipid/DNA complexes using flow cytometry and fluorescence imaging techniques
J Control Release. 2010 Aug 3;145(3):289-96.
2010
Lienkamp S, Ganner A, Boehlke C, Schmidt T, Arnold SJ, Schäfer T, Romaker D, Schuler J, Hoff S, Powelske C, Eifler A, Krönig C, Bullerkotte A, Nitschke R, Kuehn EW, Kim E, Burkhardt H, Brox T, Ronneberger O, Gloy J, Walz G.
Inversin relays Frizzled-8 signals to promote proximal pronephros development.
Proc Natl Acad Sci U S A. 2010 Nov 23;107(47):20388-93.
Role for Reelin in stabilizing cortical architecture.
Trends Neurosci. 2010 Sep;33(9):407-14.
2010
Krüger MT, Zhao S, Chai X, Brunne B, Bouché E, Bock HH, Frotscher M.
Role for Reelin-induced cofilin phosphorylation in the assembly of sympathetic preganglionic neurons in the murine intermediolateral column.
Eur J Neurosci. 2010 Nov;32(10):1611-7.
2010
Dürr J, Bücking H, Mult S, Wildhagen H, Palme K, Rennenberg H, Ditengou F, Herschbach C.
Seasonal and cell type specific expression of sulfate transporters in the phloem of Populus reveals tree specific characteristics for SO(4)(2-) storage and mobilization.
Plant Mol Biol. 2010 Mar;72(4-5):499-517.
2010
Schäffer U, Schlosser A, Müller KM, Schäfer A, Katava N, Baumeister R, Schulze E.
SnAvi–a new tandem tag for high-affinity protein-complex purification.
Nucleic Acids Res. 2010 Apr;38(6):e91.
2010
Wiedemann G, Hermsen C, Melzer M, Büttner-Mainik A, Rennenberg H, Reski R, Kopriva S.
Targeted knock-out of a gene encoding sulfite reductase in the moss Physcomitrella patens affects gametophytic and sporophytic development.
FEBS Lett. 2010 Jun 3;584(11):2271-8.
2010
Kharshiing EV, Kumar GP, Ditengou FA, Li X, Palme K, Sharma R.
The polycotyledon (pct1-2) mutant of tomato shows enhanced accumulation of PIN1 auxin transport facilitator protein.
The Rac1 regulator ELMO1 controls vascular morphogenesis in zebrafish.
Circ Res. 2010 Jul 9;107(1):45-55.
2010
Onichtchouk D, Geier F, Polok B, Messerschmidt DM, Mössner R, Wendik B, Song S, Taylor V, Timmer J, Driever W.
Zebrafish Pou5f1-dependent transcriptional networks in temporal control of early development.
Mol Syst Biol. 2010;6:354.
2015
N. Wangler, M. Welsche, G. Roth, N. Paust, R. Zengerle
A disposable discrete-agent-release cartridge for flexible endoscopes
Proc. of the 14th International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS), Groningen, The Netherlands, October 3 – 10, 2010, pp.1205 – 1207
2011
Klöppel S, Abdulkadir A, Hadjidemetriou S, Issleib S, Frings L, Thanh TN, Mader I, Teipel SJ, Hüll M, Ronneberger O.
A comparison of different automated methods for the detection of white matter lesions in MRI data.
Neuroimage. 2011 Jul 15;57(2):416-22.
2011
Herr R, Wöhrle FU, Danke C, Berens C, Brummer T.
A novel MCF-10A line allowing conditional oncogene expression in 3D culture.
Cell Commun Signal. 2011 Jul 13;9:17.
2011
Merveille AC, Davis EE, Becker-Heck A, Legendre M, Amirav I, Bataille G, Belmont J, Beydon N, Billen F, Clément A, Clercx C, Coste A, Crosbie R, de Blic J, Deleuze S, Duquesnoy P, Escalier D, Escudier E, Fliegauf M, Horvath J, Hill K, Jorissen M, Just J, Kispert A, Lathrop M, Loges NT, Marthin JK, Momozawa Y, Montantin G, Nielsen KG, Olbrich H, Papon JF, Rayet I, Roger G, Schmidts M, Tenreiro H, Towbin JA, Zelenika D, Zentgraf H, Georges M, Lequarré AS, Katsanis N, Omran H, Amselem S.
CCDC39 is required for assembly of inner dynein arms and the dynein regulatory complex and for normal ciliary motility in humans and dogs.
Nat Genet. 2011 Jan;43(1):72-8.
2011
Yaddanapudi S, Altintas MM, Kistler AD, Fernandez I, Möller CC, Wei C, Peev V, Flesche JB, Forst AL, Li J, Patrakka J, Xiao Z, Grahammer F, Schiffer M, Lohmüller T, Reinheckel T, Gu C, Huber TB, Ju W, Bitzer M, Rastaldi MP, Ruiz P, Tryggvason K, Shaw AS, Faul C, Sever S, Reiser J.
CD2AP in mouse and human podocytes controls a proteolytic program that regulates cytoskeletal structure and cellular survival.
J Clin Invest. 2011 Oct;121(10):3965-80.
2011
Tay TL, Ronneberger O, Ryu S, Nitschke R, Driever W.
Comprehensive catecholaminergic projectome analysis reveals single-neuron integration of zebrafish ascending and descending dopaminergic systems.
Nat Commun. 2011 Jan 25;2:171.
2011
Hamaratoglu F, de Lachapelle AM, Pyrowolakis G, Bergmann S, Affolter M.
Dpp signaling activity requires Pentagone to scale with tissue size in the growing Drosophila wing imaginal disc.
PLoS Biol. 2011 Oct;9(10):e1001182.
2011
Köttgen M, Hofherr A, Li W, Chu K, Cook S, Montell C, Watnick T.
Drosophila sperm swim backwards in the female reproductive tract and are activated via TRPP2 ion channels.
PLoS One. 2011;6(5):e20031.
2011
Nishie W, Kiritsi D, Nyström A, Hofmann SC, Bruckner-Tuderman L.
Dynamic interactions of epidermal collagen XVII with the extracellular matrix: laminin 332 as a major binding partner.
Am J Pathol. 2011 Aug;179(2):829-37.
2011
Tinnes S, Schäfer MK, Flubacher A, Münzner G, Frotscher M, Haas CA.
Epileptiform activity interferes with proteolytic processing of Reelin required for dentate granule cell positioning.
FASEB J. 2011 Mar;25(3):1002-13.
2011
Ben-Zvi D, Pyrowolakis G, Barkai N, Shilo BZ.
Expansion-repression mechanism for scaling the Dpp activation gradient in Drosophila wing imaginal discs.
Curr Biol. 2011 Aug 23;21(16):1391-6.
2011
Irmady K, Zechel S, Unsicker K.
Fibroblast growth factor 2 regulates astrocyte differentiation in a region-specific manner in the hindbrain.
Glia. 2011 May;59(5):708-19.
2011
Werner S, Unsicker K, von Bohlen und Halbach O.
Fibroblast growth factor-2 deficiency causes defects in adult hippocampal neurogenesis, which are not rescued by exogenous fibroblast growth factor-2.
J Neurosci Res. 2011 Oct;89(10):1605-17.
2011
Peterziel H, Sackmann T, Strelau J, Kuhn PH, Lichtenthaler SF, Marom K, Klar A, Unsicker K.
F-spondin regulates neuronal survival through activation of disabled-1 in the chicken ciliary ganglion.
Mol Cell Neurosci. 2011 Feb;46(2):483-97
2011
Hauser S, Bickel L, Weinspach D, Gerg M, Schäfer MK, Pfeifer M, Hazin J, Schelter F, Weidle UH, Ramser J, Volkmann J, Meindl A, Schmitt M, Schrötzlmair F, Altevogt P, Krüger A.
Full-length L1CAM and not its Δ2Δ27 splice variant promotes metastasis through induction of gelatinase expression.
PLoS One. 2011 Apr 25;6(4):e18989.
2011
Wanner N, Noutsou F, Baumeister R, Walz G, Huber TB, Neumann-Haefelin E.
Functional and spatial analysis of C. elegans SYG-1 and SYG-2, orthologs of the Neph/nephrin cell adhesion module directing selective synaptogenesis.
PLoS One. 2011;6(8):e23598.
2011
George B, Vollenbröker B, Saleem MA, Huber TB, Pavenstädt H, Weide T.
GSK3β inactivation in podocytes results in decreased phosphorylation of p70S6K accompanied by cytoskeletal rearrangements and inhibited motility.
Am J Physiol Renal Physiol. 2011 May;300(5):F1152-62.
2011
Yuan,Y., Riehle,F., Nitschke,R., Krüger, M.
Highly photoluminescent and photostable CdSe quantum dot–nylon hybrid composites for efficient light conversion applications,
Materials Science and Engineering B 177 (2011), 245 -250.
2011
N Wangler, L Gutzweiler, K Kalkandjiev, C Müller, F Mayenfels, H Reinecke, R Zengerle, N Paust
High-resolution permanent photoresist laminate TMMF for sealed microfluidic structures in biological applications
J. Micromech. Microeng. 21 095009 doi:10.1088/0960-1317/21/9/095009
2011
Weide T, Huber TB.
Implications of autophagy for glomerular aging and disease.
Cell Tissue Res. 2011 Mar;343(3):467-73.
2011
Has C, Castiglia D, del Rio M, Diez MG, Piccinni E, Kiritsi D, Kohlhase J, Itin P, Martin L, Fischer J, Zambruno G, Bruckner-Tuderman L.
Kindler syndrome: extension of FERMT1 mutational spectrum and natural history.
Hum Mutat. 2011 Nov;32(11):1204-12.
2011
He Y, Esser P, Heinemann A, Bruckner-Tuderman L, Has C.
Kindlin-1 and -2 have overlapping functions in epithelial cells implications for phenotype modification.
Am J Pathol. 2011 Mar;178(3):975-82.
2011
Pigors M, Kiritsi D, Krümpelmann S, Wagner N, He Y, Podda M, Kohlhase J, Hausser I, Bruckner-Tuderman L, Has C.
Lack of plakoglobin leads to lethal congenital epidermolysis bullosa: a novel clinico-genetic entity.
Hum Mol Genet. 2011 May 1;20(9):1811-9.
2011
Huber TB, Walz G, Kuehn EW.
mTOR and rapamycin in the kidney: signaling and therapeutic implications beyond immunosuppression.
Kidney Int. 2011 Mar;79(5):502-11.
2011
Inoki K, Mori H, Wang J, Suzuki T, Hong S, Yoshida S, Blattner SM, Ikenoue T, Rüegg MA, Hall MN, Kwiatkowski DJ, Rastaldi MP, Huber TB, Kretzler M, Holzman LB, Wiggins RC, Guan KL.
mTORC1 activation in podocytes is a critical step in the development of diabetic nephropathy in mice.
J Clin Invest. 2011 Jun;121(6):2181-96.
2011
Slanchev K, Pütz M, Schmitt A, Kramer-Zucker A, Walz G.
Nephrocystin-4 is required for pronephric duct-dependent cloaca formation in zebrafish.
Hum Mol Genet. 2011 Aug 15;20(16):3119-28
2011
Brockschmidt A, Filippi A, Charbel Issa P, Nelles M, Urbach H, Eter N, Driever W, Weber RG.
Neurologic and ocular phenotype in Pitt-Hopkins syndrome and a zebrafish model.
Hum Genet. 2011 Nov;130(5):645-55.
2011
Yan H, Marquardt K, Indorf M, Jutt D, Kircher S, Neuhaus G, Rodríguez-Franco M.
Nuclear localization and interaction with COP1 are required for STO/BBX24 function during photomorphogenesis.
Plant Physiol. 2011 Aug;156(4):1772-82.
2011
Simons M, Huber TB.
Old friends form alliance against podocytes.
Kidney Int. 2011 Dec;80(11):1117-9.
2011
Rausenberger J, Tscheuschler A, Nordmeier W, Wüst F, Timmer J, Schäfer E, Fleck C, Hiltbrunner A.
Photoconversion and nuclear trafficking cycles determine phytochrome A’s response profile to far-red light.
Cell. 2011 Sep 2;146(5):813-25.
2011
Belting HG, Wendik B, Lunde K, Leichsenring M, Mössner R, Driever W, Onichtchouk D.
Pou5f1 contributes to dorsoventral patterning by positive regulation of vox and modulation of fgf8a expression.
Dev Biol. 2011 Aug 15;356(2):323-36.
2011
Riediger F, Quack I, Qadri F, Hartleben B, Park JK, Potthoff SA, Sohn D, Sihn G, Rousselle A, Fokuhl V, Maschke U, Purfürst B, Schneider W, Rump LC, Luft FC, Dechend R, Bader M, Huber TB, Nguyen G, Muller DN.
Prorenin receptor is essential for podocyte autophagy and survival.
J Am Soc Nephrol. 2011 Dec;22(12):2193-202.
2011
Geyer M, Wilpert J, Wiech T, Theilacker C, Stubanus M, Kramer-Zucker A, Fischer KG, Drognitz O, Frydrychowicz A, Kern W, Walz G, Pisarski P.
Rapidly progressive hepatic alveolar echinococcosis in an ABO-incompatible renal transplant recipient.
Transpl Infect Dis. 2011 Jun;13(3):278-84.
2011
Schindowski K, von Bohlen und Halbach O, Strelau J, Ridder DA, Herrmann O, Schober A, Schwaninger M, Unsicker K.
Regulation of GDF-15, a distant TGF-β superfamily member, in a mouse model of cerebral ischemia.
Cell Tissue Res. 2011 Feb;343(2):399-409.
2011
Hellwig S, Hack I, Kowalski J, Brunne B, Jarowyj J, Unger A, Bock HH, Junghans D, Frotscher M.
Role for Reelin in neurotransmitter release.
J Neurosci. 2011 Feb 16;31(7):2352-60. d
2011
He Y, Esser P, Schacht V, Bruckner-Tuderman L, Has C.
Role of kindlin-2 in fibroblast functions: implications for wound healing.
J Invest Dermatol. 2011 Jan;131(1):245-56.
2011
Gödel M, Hartleben B, Herbach N, Liu S, Zschiedrich S, Lu S, Debreczeni-Mór A, Lindenmeyer MT, Rastaldi MP, Hartleben G, Wiech T, Fornoni A, Nelson RG, Kretzler M, Wanke R, Pavenstädt H, Kerjaschki D, Cohen CD, Hall MN, Rüegg MA, Inoki K, Walz G, Huber TB.
Role of mTOR in podocyte function and diabetic nephropathy in humans and mice.
J Clin Invest. 2011 Jun;121(6):2197-209.
2011
Rolyan H, Scheffold A, Heinrich A, Begus-Nahrmann Y, Langkopf BH, Hölter SM, Vogt-Weisenhorn DM, Liss B, Wurst W, Lie DC, Thal DR, Biber K, Rudolph KL.
Telomere shortening reduces Alzheimer’s disease amyloid pathology in mice.
Brain. 2011 Jul;134(Pt 7):2044-56.
2011
Witte K, Schuh AL, Hegermann J, Sarkeshik A, Mayers JR, Schwarze K, Yates JR 3rd, Eimer S, Audhya A.
TFG-1 function in protein secretion and oncogenesis.
Nat Cell Biol. 2011 May;13(5):550-8.
2011
Höhne M, Lorscheider J, von Bardeleben A, Dufner M, Scharf MA, Gödel M, Helmstädter M, Schurek EM, Zank S, Gerke P, Kurschat C, Sivritas SH, Neumann-Haefelin E, Huber TB, Reinhardt HC, Schauss AC, Schermer B, Fischbach KF, Benzing T.
The BAR domain protein PICK1 regulates cell recognition and morphogenesis by interacting with Neph proteins.
Mol Cell Biol. 2011 Aug;31(16):3241-51.
2011
Luo L, Hannemann M, Koenig S, Hegermann J, Ailion M, Cho MK, Sasidharan N, Zweckstetter M, Rensing SA, Eimer S.
The Caenorhabditis elegans GARP complex contains the conserved Vps51 subunit and is required to maintain lysosomal morphology.
Mol Biol Cell. 2011 Jul 15;22(14):2564-78.
2011
Becker-Heck A, Zohn IE, Okabe N, Pollock A, Lenhart KB, Sullivan-Brown J, McSheene J, Loges NT, Olbrich H, Haeffner K, Fliegauf M, Horvath J, Reinhardt R, Nielsen KG, Marthin JK, Baktai G, Anderson KV, Geisler R, Niswander L, Omran H, Burdine RD.
The coiled-coil domain containing protein CCDC40 is essential for motile cilia function and left-right axis formation.
Nat Genet. 2011 Jan;43(1):79-84.
2011
Iwafuchi-Doi M, Yoshida Y, Onichtchouk D, Leichsenring M, Driever W, Takemoto T, Uchikawa M, Kamachi Y, Kondoh H.
The Pou5f1/Pou3f-dependent but SoxB-independent regulation of conserved enhancer N2 initiates Sox2 expression during epiblast to neural plate stages in vertebrates.
Dev Biol. 2011 Apr 15;352(2):354-66.
2011
Costello I, Pimeisl IM, Dräger S, Bikoff EK, Robertson EJ, Arnold SJ.
The T-box transcription factor Eomesodermin acts upstream of Mesp1 to specify cardiac mesoderm during mouse gastrulation.
Nat Cell Biol. 2011 Aug 7;13(9):1084-91.
2011
Fuchs A., Cheung LS. Charbonnier E., Shvartsman SY., Pyrowolakis G
Transcriptional Interpretation of the EGFR Signaling Gradient.
Proc Natl Acad Sci U S A. 2012 Jan 31;109(5):1572-7. doi: 10.1073/pnas.1115190109. Epub 2012 Jan 17.
2011
Kremerskothen J, Stölting M, Wiesner C, Korb-Pap A, van Vliet V, Linder S, Huber TB, Rottiers P, Reuzeau E, Genot E, Pavenstädt H.
Zona occludens proteins modulate podosome formation and function
FASEB J. 2011 Feb;25(2):505-14.
2010
Fuchs A, Inthal A, Herrmann D, Cheng S, Nakatomi M, Peters H, Neubüser A.
Regulation of Tbx22 during facial and palatal development.
Dev Dyn. 2010 Nov;239(11):2860-74.
2012
Dalle Pezze P, Sonntag AG, Thien A, Prentzell MT, Gödel M, Fischer S, Neumann-Haefelin E, Huber TB, Baumeister R, Shanley DP, Thedieck K.
A dynamic network model of mTOR signaling reveals TSC-independent mTORC2 regulation.
Sci Signal. 2012 Mar 27;5(217):ra25.
2012
Filippi A, Jainok C, Driever W.
Analysis of transcriptional codes for zebrafish dopaminergic neurons reveals essential functions of Arx and Isl1 in prethalamic dopaminergic neuron development.
Dev Biol. 2012 Sep 1;369(1):133-49.
2012
Liu S, Hartleben B, Kretz O, Wiech T, Igarashi P, Mizushima N, Walz G, Huber TB.
Autophagy plays a critical role in kidney tubule maintenance, aging and ischemia-reperfusion injury.
Autophagy. 2012 May 1;8(5):826-37.
2012
Dieni S, Matsumoto T, Dekkers M, Rauskolb S, Ionescu MS, Deogracias R, Gundelfinger ED, Kojima M, Nestel S, Frotscher M, Barde YA.
BDNF and its pro-peptide are stored in presynaptic dense core vesicles in brain neurons.
J Cell Biol. 2012 Mar 19;196(6):775-88.
2012
Panizzi JR, Becker-Heck A, Castleman VH, Al-Mutairi DA, Liu Y, Loges NT, Pathak N, Austin-Tse C, Sheridan E, Schmidts M, Olbrich H, Werner C, Häffner K, Hellman N, Chodhari R, Gupta A, Kramer-Zucker A, Olale F, Burdine RD, Schier AF, O’Callaghan C, Chung EM, Reinhardt R, Mitchison HM, King SM, Omran H, Drummond IA.
CCDC103 mutations cause primary ciliary dyskinesia by disrupting assembly of ciliary dynein arms.
Nat Genet. 2012 May 13;44(6):714-9.
2012
Molnár E, Swamy M, Holzer M, Beck-García K, Worch R, Thiele C, Guigas G, Boye K, Luescher IF, Schwille P, Schubert R, Schamel WW
Cholesterol and sphingomyelin drive ligand-independent T-cell antigen receptor nanoclustering.
J Biol Chem. 2012 Dec 14;287(51):42664-74. doi: 10.1074/jbc.M112.386045.
2012
Schmitt-Graeff AH, Duerkop H, Vollmer-Kary B, Haxelmans S, Nitschke R, Fisch P, Germing U, Stein H.
Clonal relationship between langerhans cell histiocytosis and myeloid sarcoma.
Leukemia. 2012 Jul;26(7):1707-10.
2012
Owald D, Khorramshahi O, Gupta VK, Banovic D, Depner H, Fouquet W, Wichmann C, Mertel S, Eimer S, Reynolds E, Holt M, Aberle H, Sigrist SJ.
Cooperation of Syd-1 with Neurexin synchronizes pre- with postsynaptic assembly.
Nat Neurosci. 2012 Sep;15(9):1219-26.
2012
Fernandes AM, Fero K, Arrenberg AB, Bergeron SA, Driever W, Burgess HA.
Deep brain photoreceptors control light-seeking behavior in zebrafish larvae.
Curr Biol. 2012 Nov 6;22(21):2042-7.
2012
Schweitzer J, Lohr H, Filippi A, Driever W.
Dopaminergic and noradrenergic circuit development in zebrafish.
Dev Neurobiol. 2012 Mar;72(3):256-68.
2012
Huber TB, Edelstein CL, Hartleben B, Inoki K, Dong Z, Koya D, Kume S, Lieberthal W, Pallet N, Quiroga A, Ravichandran K, Susztak K, Yoshida S, Dong Z.
Emerging role of autophagy in kidney function, diseases and aging.
Autophagy. 2012 Jul 1;8(7):1009-31.
2012
Sibbe M, Häussler U, Dieni S, Althof D, Haas CA, Frotscher M.
Experimental epilepsy affects Notch1 signalling and the stem cell pool in the dentate gyrus.
Eur J Neurosci. 2012 Dec;36(12):3643-52
2012
Zhou W, Otto EA, Cluckey A, Airik R, Hurd TW, Chaki M, Diaz K, Lach FP, Bennett GR, Gee HY, Ghosh AK, Natarajan S, Thongthip S, Veturi U, Allen SJ, Janssen S, Ramaswami G, Dixon J, Burkhalter F, Spoendlin M, Moch H, Mihatsch MJ, Verine J, Reade R, Soliman H, Godin M, Kiss D, Monga G, Mazzucco G, Amann K, Artunc F, Newland RC, Wiech T, Zschiedrich S, Huber TB, Friedl A, Slaats GG, Joles JA, Goldschmeding R, Washburn J, Giles RH, Levy S, Smogorzewska A, Hildebrandt F.
FAN1 mutations cause karyomegalic interstitial nephritis, linking chronic kidney failure to defective DNA damage repair.
Nat Genet. 2012 Jul 8;44(8):910-5
2012
Voz ML, Coppieters W, Manfroid I, Baudhuin A, Von Berg V, Charlier C, Meyer D, Driever W, Martial JA, Peers B.
Fast homozygosity mapping and identification of a zebrafish ENU-induced mutation by whole-genome sequencing.
PLoS One. 2012;7(4):e34671.
2012
Skibbe H, Reisert M, Schmidt T, Brox T, Ronneberger O, Burkhardt H.
Fast rotation invariant 3D feature computation utilizing efficient local neighborhood operators.
IEEE Trans Pattern Anal Mach Intell. 2012 Aug;34(8):1563-75.
2012
Manoli M, Driever W
Fluorescence-activated cell sorting (FACS) of fluorescently tagged cells from zebrafish larvae for RNA isolation.
Cold Spring Harb Protoc 2012.
2012
Helmstädter M, Lüthy K, Gödel M, Simons M, Ashish, Nihalani D, Rensing SA, Fischbach KF, Huber TB.
Functional study of mammalian Neph proteins in Drosophila melanogaster.
PLoS One. 2012;7(7):e40300.
2012
Serchov T, Atas HC, Normann C, van Calker D, Biber K.
Genetically controlled upregulation of adenosine A(1) receptor expression enhances the survival of primary cortical neurons.
Mol Neurobiol. 2012 Oct;46(2):535-44.
2012
Klionsky DJ, …, Huber TB, …, Zuckerbraun B
Guidelines for the use and interpretation of assays for monitoring autophagy.
Autophagy. 2012 Apr;8(4):445-544.
2012
Schwenk J, Harmel N, Brechet A, Zolles G, Berkefeld H, Müller CS, Bildl W, Baehrens D, Hüber B, Kulik A, Klöcker N, Schulte U, Fakler B.
High-resolution proteomics unravel architecture and molecular diversity of native AMPA receptor complexes.
Neuron. 2012 May 24;74(4):621-33.
2012
Tharaux PL, Huber TB.
How many ways can a podocyte die?
Semin Nephrol. 2012 Jul;32(4):394-404.
2012
Greese B, Wester K, Bensch R, Ronneberger O, Timmer J, Huulskamp M, Fleck C.
Influence of cell-to-cell variability on spatial pattern formation.
IET Syst Biol. 2012 Aug;6(4):143-53.
2012
Fatouros C, Pir GJ, Biernat J, Koushika SP, Mandelkow E, Mandelkow EM, Schmidt E, Baumeister R.
Inhibition of tau aggregation in a novel Caenorhabditis elegans model of tauopathy mitigates proteotoxicity.
Hum Mol Genet. 2012 Aug 15;21(16):3587-603.
2012
Has C, Spartà G, Kiritsi D, Weibel L, Moeller A, Vega-Warner V, Waters A, He Y, Anikster Y, Esser P, Straub BK, Hausser I, Bockenhauer D, Dekel B, Hildebrandt F, Bruckner-Tuderman L, Laube GF.
Integrin α3 mutations with kidney, lung, and skin disease.
N Engl J Med. 2012 Apr 19;366(16):1508-14.
2012
Schell CB, Kerjaschki D, Reiser J, Huber TB.
Is podocyte research at a tipping point? Report from the 9(th) International Podocyte Conference.
Kidney Int. 2012 Nov;82(10):1041-3.
2012
Inoki K, Huber TB.
Mammalian target of rapamycin signaling in the podocyte.
Temerinac-Ott M, Ronneberger O, Ochs P, Driever W, Brox T, Burkhardt H.
Multiview deblurring for 3-D images from light-sheet-based fluorescence microscopy.
IEEE Trans Image Process. 2012 Apr;21(4):1863-73.
2012
Vinet J, Weering HR, Heinrich A, Kälin RE, Wegner A, Brouwer N, Heppner FL, Rooijen Nv, Boddeke HW, Biber K.
Neuroprotective function for ramified microglia in hippocampal excitotoxicity.
J Neuroinflammation. 2012 Jan 31;9:27.
2012
Schell C, Huber TB.
New players in the pathogenesis of focal segmental glomerulosclerosis.
Nephrol Dial Transplant. 2012 Sep;27(9):3406-12.
2012
Studencka M, Konzer A, Moneron G, Wenzel D, Opitz L, Salinas-Riester G, Bedet C, Krüger M, Hell SW, Wisniewski JR, Schmidt H, Palladino F, Schulze E, Jedrusik-Bode M.
Novel roles of Caenorhabditis elegans heterochromatin protein HP1 and linker histone in the regulation of innate immune gene expression.
Mol Cell Biol. 2012 Jan;32(2):251-65.
2012
Chua JJ, Butkevich E, Worseck JM, Kittelmann M, Grønborg M, Behrmann E, Stelzl U, Pavlos NJ, Lalowski MM, Eimer S, Wanker EE, Klopfenstein DR, Jahn R.
Phosphorylation-regulated axonal dependent transport of syntaxin 1 is mediated by a Kinesin-1 adapter.
Proc Natl Acad Sci U S A. 2012 Apr 10;109(15):5862-7.
2012
Grall A, Guaguère E, Planchais S, Grond S, Bourrat E, Hausser I, Hitte C, Le Gallo M, Derbois C, Kim GJ, Lagoutte L, Degorce-Rubiales F, Radner FP, Thomas A, Küry S, Bensignor E, Fontaine J, Pin D, Zimmermann R, Zechner R, Lathrop M, Galibert F, André C, Fischer J.
PNPLA1 mutations cause autosomal recessive congenital ichthyosis in golden retriever dogs and humans.
Nat Genet. 2012 Jan 15;44(2):140-7.
2012
Shi A, Liu O, Koenig S, Banerjee R, Chen CC, Eimer S, Grant BD.
RAB-10-GTPase-mediated regulation of endosomal phosphatidylinositol-4,5-bisphosphate.
Proc Natl Acad Sci U S A. 2012 Aug 28;109(35):E2306-15.
2012
Sasidharan N, Sumakovic M, Hannemann M, Hegermann J, Liewald JF, Olendrowitz C, Koenig S, Grant BD, Rizzoli SO, Gottschalk A, Eimer S.
RAB-5 and RAB-10 cooperate to regulate neuropeptide release in Caenorhabditis elegans.
Proc Natl Acad Sci U S A. 2012 Nov 13;109(46):18944-9.
2012
Kiritsi D, He Y, Pasmooij AM, Onder M, Happle R, Jonkman MF, Bruckner-Tuderman L, Has C.
Revertant mosaicism in a human skin fragility disorder results from slipped mispairing and mitotic recombination.
J Clin Invest. 2012 May 1;122(5):1742-6.
2012
Linkermann A, Bräsen JH, Himmerkus N, Liu S, Huber TB, Kunzendorf U, Krautwald S.
Rip1 (receptor-interacting protein kinase 1) mediates necroptosis and contributes to renal ischemia/reperfusion injury.
Kidney Int. 2012 Apr;81(8):751-61.
2012
Schäfer MK, Frotscher M.
Role of L1CAM for axon sprouting and branching.
Cell Tissue Res. 2012 Jul;349(1):39-48.
2012
Hartleben B, Widmeier E, Wanner N, Schmidts M, Kim ST, Schneider L, Mayer B, Kerjaschki D, Miner JH, Walz G, Huber TB.
Role of the polarity protein Scribble for podocyte differentiation and maintenance.
PLoS One. 2012;7(5):e36705.
2012
Ernst S, Liu K, Agarwala S, Moratscheck N, Avci ME, Dalle Nogare D, Chitnis AB, Ronneberger O, Lecaudey V.
Shroom3 is required downstream of FGF signalling to mediate proneuromast assembly in zebrafish.
Development. 2012 Dec;139(24):4571-81
2012
Georg I, Barrionuevo F, Wiech T, Scherer G.
Sox9 and Sox8 are required for basal lamina integrity of testis cords and for suppression of FOXL2 during embryonic testis development in mice.
Biol Reprod. 2012 Oct 25;87(4):99.
2012
Hannemann M, Sasidharan N, Hegermann J, Kutscher LM, Koenig S, Eimer S.
TBC-8, a putative RAB-2 GAP, regulates dense core vesicle maturation in Caenorhabditis elegans.
PLoS Genet. 2012;8(5):e1002722.
2012
Liu S, Schulze E, Baumeister R.
Temperature- and touch-sensitive neurons couple CNG and TRPV channel activities to control heat avoidance in Caenorhabditis elegans.
PLoS One. 2012;7(3):e32360.
2012
Pigors M, Kiritsi D, Cobzaru C, Schwieger-Briel A, Suárez J, Faletra F, Aho H, Mäkelä L, Kern JS, Bruckner-Tuderman L, Has C.
TGM5 mutations impact epidermal differentiation in acral peeling skin syndrome.
J Invest Dermatol. 2012 Oct;132(10):2422-9.
2012
Dal Bosco C, Dovzhenko A, Liu X, Woerner N, Rensch T, Eismann M, Eimer S, Hegermann J, Paponov IA, Ruperti B, Heberle-Bors E, Touraev A, Cohen JD, Palme K.
The endoplasmic reticulum localized PIN8 is a pollen-specific auxin carrier involved in intracellular auxin homeostasis.
Plant J. 2012 Sep;71(5):860-70.
2012
Birke H, Müller SJ, Rother M, Zimmer AD, Hoernstein SN, Wesenberg D, Wirtz M, Krauss GJ, Reski R, Hell R.
The relevance of compartmentation for cysteine synthesis in phototrophic organisms.
Protoplasma. 2012 Jun;249 Suppl 2:S147-55
2012
Lienkamp SS, Liu K, Karner CM, Carroll TJ, Ronneberger O, Wallingford JB, Walz G.
Vertebrate kidney tubules elongate using a planar cell polarity-dependent, rosette-based mechanism of convergent extension.
Nat Genet. 2012 Dec;44(12):1382-7.
2012
Ronneberger O, Liu K, Rath M, Rueβ D, Mueller T, Skibbe H, Drayer B, Schmidt T, Filippi A, Nitschke R, Brox T, Burkhardt H, Driever W.
ViBE-Z: a framework for 3D virtual colocalization analysis in zebrafish larval brains.
Nat Methods. 2012 Jun 17;9(7):735-42.
2013
Grahammer F, Schell C, Huber TB.
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Pediatr Nephrol. 2013 Oct;28(10):1957-62.
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Kiritsi D, Chmel N, Arnold AW, Jakob T, Bruckner-Tuderman L, Has C.
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J Invest Dermatol. 2013 Oct;133(10):2483-6.
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Filippi A, Mueller T, Driever W.
vglut2 and gad expression reveal distinct patterns of dual GABAergic versus glutamatergic cotransmitter phenotypes of dopaminergic and noradrenergic neurons in the zebrafish brain.
J Comp Neurol 522: 2019-37.
2013
Kim YH, Epting D, Slanchev K, Engel C, Walz G, Kramer-Zucker A
A complex of BBS1 and NPHP7 is required for cilia motility in zebrafish.
PLoS One. 2013 Sep 12;8(9):e72549
2013
Koch P, Lohr HB, Driever W
A mutation in cnot8, component of the Ccr4-not complex regulating transcript stability, affects expression levels of developmental regulators and reveals a role of Fgf3 in development of caudal hypothalamic dopaminergic neurons.
PLoS One 9: e113829.
2013
Gödel M, Ostendorf BN, Baumer J, Weber K, Huber TB.
A novel domain regulating degradation of the glomerular slit diaphragm protein podocin in cell culture systems.
PLoS One. 2013;8(2):e57078.
2013
Hoff S, Halbritter J, Epting D, Frank V, Nguyen TM, van Reeuwijk J, Boehlke C, Schell C, Yasunaga T, Helmstädter M, Mergen M, Filhol E, Boldt K, Horn N, Ueffing M, Otto EA, Eisenberger T, Elting MW, van Wijk JA, Bockenhauer D, Sebire NJ, Rittig S, Vyberg M, Ring T, Pohl M, Pape L, Neuhaus TJ, Elshakhs NA, Koon SJ, Harris PC, Grahammer F, Huber TB, Kuehn EW, Kramer-Zucker A, Bolz HJ, Roepman R, Saunier S, Walz G, Hildebrandt F, Bergmann C, Lienkamp SS
ANKS6 is a central component of a nephronophthisis module linking NEK8 to INVS and NPHP3
Nat Genet. 2013 Aug;45(8):951-6.
2013
Hartleben B, Widmeier E, Suhm M, Worthmann K, Schell C, Helmstädter M, Wiech T, Walz G, Leitges M, Schiffer M, Huber TB.
aPKCλ/ι and aPKCζ contribute to podocyte differentiation and glomerular maturation.
J Am Soc Nephrol. 2013 Feb;24(2):253-67.
2013
Geissler, A., Haun, F., Frank, D., Wieland, K., Simon, M., Idzko, M., Davis, R., Maurer, U. & Borner, C.
Apoptosis induced by the fungal pathogen gliotoxin requires a triple phosphorylation of Bim by JNK.
Cell Death Differ. (2013) 20, 1317–1329
2013
Schober A, Parlato R, Huber K, Kinscherf R, Hartleben B, Huber TB, Schütz G, Unsicker K.
Cell loss and autophagy in the extra-adrenal chromaffin organ of Zuckerkandl are regulated by glucocorticoid signalling.
J Neuroendocrinol. 2013 Jan;25(1):34-47.
2013
Nyström A, Velati D, Mittapalli VR, Fritsch A, Kern JS, Bruckner-Tuderman L.
Collagen VII plays a dual role in wound healing.
J Clin Invest. 2013 Aug;123(8):3498-509.
2013
Dominic Mai, Philipp Fischer, Thomas Blein, Jasmin Dürr, Klaus Palme, Thomas Brox, Olaf Ronneberger
Discriminative Detection and Alignment in Volumetric Data
Enlightening the brain: linking deep brain photoreception with behavior and physiology.
Bioessays 35: 775-9.
2013
Kiritsi D, Pigors M, Tantcheva-Poor I, Wessel C, Arin MJ, Kohlhase J, Bruckner-Tuderman L, Has C.
Epidermolysis bullosa simplex ogna revisited.
J Invest Dermatol. 2013 Jan;133(1):270-3.
2013
Abdulkadir A, Ronneberger O, Wolf RC, Pfleiderer B, Saft C, Klöppel S.
Functional and structural MRI biomarkers to detect pre-clinical neurodegeneration.
Curr Alzheimer Res. 2013 Feb;10(2):125-34.
2013
Küttner V, Mack C, Rigbolt KT, Kern JS, Schilling O, Busch H, Bruckner-Tuderman L, Dengjel J.
Global remodelling of cellular microenvironment due to loss of collagen VII.
Mol Syst Biol. 2013 Apr 16;9:657.
2013
Faller S, Spassov SG, Zimmermann KK, Ryter SW, Buerkle H, Loop T, Schmidt R, Strosing KM, Hoetzel A.
Hydrogen Sulfide Prevents Hyperoxia-induced Lung Injury by Downregulating Reactive Oxygen Species Formation and Angiopoietin-2 Release.
Curr Pharm Des. 2013;19(15):2715-21
2013
Weber M, Gawanbacht A, Habjan M, Rang A, Borner C, Schmidt AM, Veitinger S, Jacob R, Devignot S, Kochs G, García-Sastre A, Weber F.
Incoming RNA virus nucleocapsids containing a 5′-triphosphorylated genome activate RIG-I and antiviral signaling.
Cell Host Microbe. 2013 Mar 13;13(3):336-46.
2013
Thedieck K, Holzwarth B, Prentzell MT, Boehlke C, Kläsener K, Ruf S, Sonntag AG, Maerz L, Grellscheid SN, Kremmer E, Nitschke R, Kuehn EW, Jonker JW, Groen AK, Reth M, Hall MN, Baumeister R.
Inhibition of mTORC1 by astrin and stress granules prevents apoptosis in cancer cells.
Cell. 2013 Aug 15;154(4):859-74.
2013
Driever, W. and Arrenberg A.B.
Integrating anatomy and function for zebrafish circuit analysis. Frontiers in Neural Circuit Analysis 7
Front Neural Circuits. 2013 Apr 23;7:74.
2013
K. Liu, T. Schmidt, T. Blein, J. Dürr, K. Palme, O. Ronneberger
Joint 3D Cell Segmentation and Classification in the Arabidopsis Root using Energy Minimization and Shape Priors
IEEE International Symposium on Biomedical Imaging (ISBI): 422–425, 2013
2013
Sumit Deswal, Anja Meyer, Gina J. Fiala, Anja E. Eisenhardt, Lisa C. Schmitt, Mogjiborahman Salek, Tilman Brummer, Oreste Acuto and Wolfgang W. A. Schamel
Kidins220/ARMS Associates with B-Raf and the TCR,Promoting Sustained Erk Signaling in T Cells
Kif3a guides microtubular dynamics, migration and lumen formation of MDCK cells.
PLoS One. 2013 May 1;8(5):e62165.
2013
Schmid B, Hruscha A, Hogl S, Banzhaf-Strathmann J, Strecker K, van der Zee J, Teucke M, Eimer S, Hegermann J, Kittelmann M, Kremmer E, Cruts M, Solchenberger B, Hasenkamp L, van Bebber F, Van Broeckhoven C, Edbauer D, Lichtenthaler SF, Haass C.
Loss of ALS-associated TDP-43 in zebrafish causes muscle degeneration, vascular dysfunction, and reduced motor neuron axon outgrowth.
Proc Natl Acad Sci U S A. 2013 Mar 26;110(13):4986-91
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Kierdorf K, Erny D, Goldmann T, Sander V, Schulz C, Perdiguero EG, Wieghofer P, Heinrich A, Riemke P, Hölscher C, Müller DN, Luckow B, Brocker T, Debowski K, Fritz G, Opdenakker G, Diefenbach A, Biber K, Heikenwalder M, Geissmann F, Rosenbauer F, Prinz M.
Microglia emerge from erythromyeloid precursors via Pu.1- and Irf8-dependent pathways.
Nat Neurosci. 2013 Mar;16(3):273-80.
2013
Nawaz S, Schweitzer J, Jahn O, Werner HB
Molecular evolution of myelin basic protein, an abundant structural myelin component.
Glia. 2013 Aug;61(8):1364-77.
2013
Boerries M, Grahammer F, Eiselein S, Buck M, Meyer C, Goedel M, Bechtel W, Zschiedrich S, Pfeifer D, Laloë D, Arrondel C, Gonçalves S, Krüger M, Harvey SJ, Busch H, Dengjel J, Huber TB.
Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks.
Kidney Int. 2013 Jan 30.
2013
Lindenboim L, Ferrando-May E, Borner C, Stein R.
Non-canonical function of Bax in stress-induced nuclear protein redistribution.
Cell Mol Life Sci. 2013 Mar 9.
2013
Bensch R, Song S, Ronneberger O, Driever W
Non-directional radial intercalation dominates deep cell behavior during zebrafish epiboly.
TORC2 signaling antagonizes SKN-1 to induce C. elegans mesendodermal embryonic development.
Dev Biol. 2013 Dec 15;384(2):214-27.
2013
Schmidt T, Dürr J, Keuper M, Blein T, Palme K, Ronneberger O
Variational Attenuation Correction in Two-View Confocal Microscopy
BMC Bioinformatics. 2013 Dec 18;14:366.
2013
Bechtel W, Helmstädter M, Balica J, Hartleben B, Kiefer B, Hrnjic F, Schell C, Kretz O, Liu S, Geist F, Kerjaschki D, Walz G, Huber TB.
Vps34 Deficiency Reveals the Importance of Endocytosis for Podocyte Homeostasis.
J Am Soc Nephrol. 2013 Mar 19.
2013
Bader HL, Lambert E, Guiraud A, Malbouyres M, Driever W, Koch M, Ruggiero F.
Zebrafish collagen XIV is transiently expressed in epithelia and is required for proper function of certain basement membranes.
J Biol Chem. 2013 Mar 8;288(10):6777-87.
2014
Hörner M, Kaufmann B, Cotugno G, Wiedtke E, Büning H, Grimm D, Weber W
A chemical switch for controlling viral infectivity
Chem Commun (Camb). 2014 Sep 14;50(71):10319
2014
D. Mai, J. Dürr, K. Palme, O. Ronneberger
Accurate Detection in Volumetric Images using Elastic Registration based Validation
German Conference on Pattern Recognition (GCPR): 453–463, 2014
2014
Dresen A, Finkbeiner S, Dottermusch M, Beume JS, Li Y, Walz G, Neumann-Haefelin E
Caenorhabditis elegans OSM-11 signaling regulates SKN-1/Nrf during embryonic development and adult longevity and stress response.
Dev Biol. 2015 Jan 29. pii: S0012-1606(15)00041-X.
2014
Winkelmann A, Maggio N, Eller J, Caliskan G, Semtner M, Häussler U, Jüttner R, Dugladze T, Smolinsky B, Kowalczyk S, Chronowska E, Schwarz G, Rathjen FG, Rechavi G, Haas CA, Kulik A, Gloveli T, Heinemann U, Meier JC.
Changes in neural network homeostasis trigger neuropsychiatric symptoms.
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2014
Taschner M, Kotsis F, Braeuer P, Kuehn EW, Lorentzen E.
Crystal structures of IFT70/52 and IFT52/46 provide insight into intraflagellar transport B core complex assembly
J Cell Biol. 2014 Oct 27;207(2):269-82.
2014
Chai X, Münzner G, Zhao S, Tinnes S, Kowalski J, Häussler U, Young C, Haas CA, Frotscher M.
Epilepsy-induced motility of differentiated neurons.
Cereb Cortex. 2014 Aug;24(8):2130-40. doi: 10.1093/cercor/bht067. Epub 2013 Mar 15.
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Weinberg F, Schulze E, Fatouros C, Schmidt E, Baumeister R, Brummer T.
Expression pattern and first functional characterization of riok-1 in Caenorhabditis elegans.
Kiritsi D, Nanda A, Kohlhase J, Bernhard C, Bruckner-Tuderman L, Happle R, Has C.
Extensive postzygotic mosaicism for a novel keratin 10 mutation in epidermolytic ichthyosis.
Acta Derm Venereol. 2014 May;94(3):346-8.
2014
Kubo F, Hablitzel B, Dal MM, Driever W, Baier H, Arrenberg AB
Functional architecture of an optic flow-responsive area that drives horizontal eye movements in zebrafish.
Neuron 81: 1344-59.
2014
D. Mai, J. Dürr, K. Palme, O. Ronneberger
Improving Detection of Deformable Objects in Volumetric Data
British Machine Vision Conference (BMVC), 2014
2014
Ramachandran H, Schäfer T, Kim Y, Herfurth K, Hoff S, Lienkamp SS, Kramer-Zucker A, Walz G
Interaction with the Bardet-Biedl gene product TRIM32/BBS11 modifies the half-life and localization of Glis2/NPHP7.
J Biol Chem. 2014 Mar 21;289(12):8390-401.
2014
Pigors M, Schwieger-Briel A, Leppert J, Kiritsi D, Kohlhase J,Bruckner-Tuderman L, Has C.
Molecular Heterogeneity of Epidermolysis Bullosa Simplex: Contribution of EXPH5 Mutations.
J Invest Dermatol. 2014 Mar;134(3):842-5.
2014
Hofherr A, Wagner C, Fedeles S, Somlo S, Köttgen M.
N-glycosylation determines the abundance of the transient receptor potential channel TRPP2.
J Biol Chem. 2014 May 23;289(21):14854-67.
2014
Manoli M, Driever W.
nkx2.1 and nkx2.4 genes function partially redundant during development of the zebrafish hypothalamus, preoptic region, and pallidum.
Front Neuroanat. 2014 Dec 2;8:145
2014
K. Liu, S. Lienkamp, A. Shindo, J. Wallingford, G. Walz, O. Ronneberger
Optical Flow Guided Cell Segmentation and Tracking in Developing Tissue
IEEE International Symposium on Biomedical Imaging (ISBI): 298–301, 2014
2014
Shieh CH, Heinrich A, Serchov T, van Calker D, Biber K
P2X7-dependent, but differentially regulated release of IL-6, CCL2, and TNF-α in cultured mouse microglia.
Glia. 2014 Apr;62(4):592-607.
2014
Lippok B, Song S, Driever W.
Pou5f1 protein expression and posttranslational modification during early zebrafish development.
Dev Dyn 243: 468-77.
2014
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Pou5f1/Oct4 promotes cell survival via direct activation of mych expression during zebrafish gastrulation.
PLoS One 9: e92356.
2014
Mueller, S.J., D. Lang, S.N.W. Hoernstein, E.G.E. Lang, C. Schuessele, A. Schmidt, M. Fluck, D. Leisibach, C. Niegl, A.D. Zimmer, A. Schlosser, R. Reski
Quantitative analysis of the mitochondrial and plastid proteomes of the moss Physcomitrella patens reveals protein macrocompartmentation and microcompartmentation.
Plant Physiol. 2014 Apr;164(4):2081-95
2014
He Y, Sonnenwald T, Sprenger A, Hansen U, Dengjel J, Bruckner-Tuderman L, Schmidt G, Has C.
RhoA activation by CNFy restores cell-cell adhesion in kindlin-2 deficient keratinocytes.
J Pathol. 2014 Jul;233(3):269-80.
2014
K. Liu, H. Skibbe, T. Schmid, T. Blein, K. Palme, T. Brox, and O. Ronneberger
Rotation-Invariant HOG Descriptors using Fourier Analysis in Polar and Spherical Coordinates
Int J Computer Vision February 2014, Volume 106, Issue 3, pp 342-364
2014
Zelina P, Blockus H, Zagar Y, Peres A, Friocourt F, Wu Z, Rama N, Fouquet C, Hohenester E, Tessier-Lavigne M, Schweitzer J, Roest Crollius H, Chedotal A
Signaling Switch of the Axon Guidance Receptor Robo3 during Vertebrate Evolution.
Neuron. 2014 Dec 17;84(6):1258-72.
2014
Blumenthal NR, Hermanson O, Heimrich B, Shastri VP.
Stochastic nanoroughness modulates neuron-astrocyte interactions and function via mechanosensing cation channels.
Proc Natl Acad Sci U S A. 2014 Nov 11;111(45):16124-9.
2014
Schmidt T, Pasternak T, Aubry D, Dovzhenko A, Teale W, Burkhardt H, Ronneberger O, Palme K.
The iRoCS Toolbox–3D analysis of the plant root apical meristem at cellular resolution.
Plant J. 2014 Mar;77(5):806-14
2014
Kevin Lüthy, Birgit Ahrens, Shilpa Rawal, Zhiyuan Lu, Dorota Tarnogorska, Ian A Meinertzhagen, Karl-Friedrich Fischbach
The irre Cell Recognition Module (IRM) Protein Kirre Is Required to Form the Reciprocal Synaptic Network of L4 Neurons in the Drosophila Lamina.
J Neurogenet. 2014 Sep-Dec;28(3-4):291-301.
2014
Has C, Kiritsi D, Mellerio JE, Franzke CW, Wedgeworth E, Tantcheva-Poor I, Kernland-Lang K, Itin P, Simpson MA, Dopping-Hepenstal PJ, Fujimoto W, McGrath JA, Bruckner-Tuderman L.
The Missense Mutation p.R1303Q in Type XVII Collagen Underlies Junctional Epidermolysis Bullosa Resembling Kindler Syndrome.
J Invest Dermatol. 2014 Mar;134(3):845-9.
2014
Kántor O, Varga A, Kovács-Öller T, Énzsöly A, Balogh L, Baksa G, Szepessy Z, Fonta C, Roe AW, Nitschke R, Szél Á, Négyessy L, Völgyi B, Lukáts Á.
TNAP activity is localized at critical sites of retinal neurotransmission across various vertebrate species.
hMSC-Derived VEGF Release Triggers the Chemoattraction of Alveolar Osteoblasts.
Stem Cells. 2015 Oct;33(10):3114-24.
2015
Klose C, Venezia F, Hussong A, Kircher S, Schäfer E, Fleck C.
Systematic analysis of how phytochrome B dimerization determines its specificity.
Nat Plants. 2015 Jul 6;1:15090
2015
Yasunaga T, Hoff S, Schell C, Helmstadter M, Kretz O, Kuechlin S, Yakulov TA, Engel C, Muller B, Bensch R, Ronneberger O, Huber TB, Lienkamp SS, and Walz G.
The polarity protein Inturned links NPHP4 to Daam1 to control the subapical actin network in multiciliated cells.
hMSC-Derived VEGF Release Triggers the Chemoattraction of Alveolar Osteoblasts.
Stem Cells. 2015 Oct;33(10):3114-24.
2015
Schachtrup C, Ryu JK, Mammadzada K, Khan AS, Carlton PM, Perez A, Christian F, Le Moan N, Vagena E, Baeza-Raja B, Rafalski V, Chan JP, Nitschke R, Houslay MD, Ellisman MH, Wyss-Coray T, Palop JJ, Akassoglou K.
Nuclear pore complex remodeling by p75(NTR) cleavage controls TGF-β signaling and astrocyte functions.
Nat Neurosci. 2015 Aug;18(8):1077-80.
2016
Çiçek Ö, Abdulkadir A, Lienkamp SS, Brox T, and Ronneberger O
3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation.
Medical Image Computing and Computer-Assisted Intervention – MICCAI 2016: 19th International Conference, Athens, Greece, October 17-21, 2016,Proceedings, Part II 10.1007/978-3-319-46723-8_49, S. Ourselin, L. Joskowicz, M.R. Sabuncu, G. Unal, and W. Wells,
A detailed expression map of the PIN1 auxin transporter in Arabidopsis thaliana root.
Plant Physiol. 2016 Jan;170(1):23-5
2016
Horst, N.A., A. Katz, I. Pereman, E.L. Decker, N. Ohad, R. Reski
A single homeobox gene triggers phase transition, embryogenesis and asexual reproduction.
Nature Plants 2, 15209.
2016
Asgharzadeh, P., B. Özdemir, Stefanie J. Müller, R. Reski, O. Röhrle
Analysis of confocal image data of Physcomitrella chloroplasts to reveal adaptation principles leading to structural stability at the nano scale.
Proceedings in Applied Mathematics and Mechanics 16, 69-70.
2016
Kántor O, Mezey S, Adeghate J, Naumann A, Nitschke R, Énzsöly A, Szabó A, Lukáts Á, Németh J, Somogyvári Z, Völgyi B.
Calcium buffer proteins are specific markers of human retinal neurons
Cell Tissue Res. 2016 Jul;365(1):29-50
2016
Johnston CM, Han JC, Loiselle DS, Nielsen PM, Taberner AJ
Cardiac activation heat remains
inversely dependent on temperature over the range 27-37 degrees C.
Am J Physiol-heart C,2016; 310 (11): H1512-H1519.
2016
Kántor O, Benkő Z, Énzsöly A, Dávid C, Naumann A, Nitschke R, Szabó A, Pálfi E, Orbán J, Nyitrai M, Németh J, Szél Á, Lukáts Á, Völgyi B.
Characterization of connexin36 gap junctions in the human outer retina.
Brain Struct Funct. 2016 Jul;221(6):2963-84.
2016
Kirchenbauer D, Viczián A, Ádám É, Hegedűs Z, Klose C, Leppert M, Hiltbrunner A, Kircher S, Schäfer E, Nagy F
Characterization of photomorphogenic
responses and signaling cascades controlled by phytochrome-A expressed
in different tissues.
New Phytologist Volume 211, Issue 2
2016
Gütle, D.D., T. Roret, S.J. Mueller, J. Couturier, S.D. Lemaire, A. Hecker, T. Dhalleine, B.B. Buchanan, R. Reski, O. Einsle, J.P. Jacquot
Chloroplast FBPase and SPBase are thioredoxin-linked enzymes with similar architecture but different evolutionary histories.
Proc Natl Acad Sci U S A. 2016 Jun 14;113(24):6779-84
2016
Kaminski M, Tosic J, Kresbach C, Engel H, Klockenbusche J, Müller A-L, Pichler R, Grahammer F, Kretz O, Huber TB, Walz G, Arnold SJ, Lienkamp SS.
Direct Reprogramming of Fibroblasts into Renal Tubular Epithelial Cells by Defined Transcription Factors.
Nat Cell Biol. 2016 Dec;18(12):1269-1280
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Hoernstein, S.N.W., S.J. Mueller, K. Fiedler, M. Schuelke, J.T. Vanselow, C. Schuessele, D. Lang, R. Nitschke, G.L. Igloi, A. Schlosser, R. Reski
Identification of targets and interaction partners of arginyl-tRNA protein transferase in the moss Physcomitrella patens.
Mol Cell Proteomics. 2016 Jun;15(6):1808-22.
2016
He Y, Maier K, Leppert J, Hausser I, Schwieger-Briel A, Weibel L, Theiler M, Kiritsi D, Busch H, Boerries M, Hannula-Jouppi K, Heikkilä H, Tasanen K, Castiglia D, Zambruno G, Has C.
Monoallelic Mutations in the Translation Initiation Codon of KLHL24 Cause Skin Fragility.
Am J Hum Genet 99:1395-1404, 2016
2016
Chater, C.C., R.S. Caine, M. Tomek, S. Wallace, Y. Kamisugi, A.C. Cuming, D. Lang, C.A. MacAlister, S. Casson, D.C. Bergmann, E.L. Decker, W. Frank, J.E. Gray, A. Fleming, R. Reski, D.J. Beerling
Origin and function of stomata in the moss Physcomitrella patens.
Nat Plants. 2016 Nov 28;2:16179
2016
Norman M, Vuilleumier R, Springhorn A, Gawlik J, Pyrowolakis G.
Pentagone fine-tunes glypicans to regulate multiple signaling pathways.
Elife. 2016 Jun 8;5:e13301
2016
Maier K, He Y, Esser PR, Thriene K, Sarca D, Kohlhase J, Dengjel J, Martin L, Has C.
Single Amino Acid Deletion in Kindlin-1 Results in Partial Protein Degradation Which Can Be Rescued by Chaperone Treatment.
J Invest Dermatol. 2016 May;136(5):920-929.
2016
Schuessele, C., S.N.W. Hoernstein, S.J. Mueller, M. Rodriguez-Franco, T. Lorenz, D. Lang, G.L. Igloi, R. Reski
Spatio-temporal patterning of arginyl-tRNA protein transferase (ATE) contributes to gametophytic development in a moss.
New Phytol. 2016 Feb;209(3):1014-27
2016
Pereman, I., A. Mosquna, A. Katz, G. Wiedemann, D. Lang, E.L. Decker, Y. Tamada, T. Ishikawa, T. Nishiyama, M. Hasebe, R. Reski, N. Ohad
The Polycomb group protein CLF emerges as a specific tri-methylase of H3K27 regulating gene expression and development in Physcomitrella patens.
Biochim Biophys Acta. 2016 Jul;1859(7):860-70.
2016
Raja E, Tzavlaki K, Vuilleumier R, Edlund K, Zieba A, Morén, Watanabe Y, Voytyuk I, Botling J, Söderberg O, Micke P, Pyrowolakis G, Heldin CH, Moustakas A
The protein kinase LKB1 negatively regulates bone morphogenetic protein receptor signaling.
Oncotarget, 7(2), 1120-43, 2016
2016
Maier K, He Y, Wölfle U, Esser PR, Brummer T, Schempp C, Bruckner-Tuderman L, Has C.
UV-B-induced cutaneous inflammation and prospects for antioxidant treatment in Kindler syndrome.
3D analysis of mitosis distribution highlights the longitudinal zonation and diarch symmetry in proliferation activity of the Arabidopsis thaliana root meristem.
Plant J. 2017 Dec;92(5):834-845.
2017
Pasternak T, Haser T, Falk T, Ronneberger O, Palme K, Otten L.
A 3D digital atlas of the Nicotiana tabacum root tip and its use to investigate changes in the root apical meristem induced by the Agrobacterium 6b oncogene.
Plant J. 2017 Oct;92(1):31-42. doi: 10.1111/tpj.13631. Epub 2017 Aug 11.
2017
Probst, S., Daza, R., Bader, N., Hummel, J.F., Weiß, M., Tanriver, Y., Hevner, R.F., Arnold, S.J.
A Dual-Fluorescence Reporter in the Eomes Locus for Live Imaging and Medium-Term Lineage Tracing,
Genesis. 2017 Aug;55(8):10.1002/dvg.23043
2017
Johnson GR, Kangas JD, Dovzhenko A, Trojok R, Voigt K, Majarian TD, Palme K, Murphy RF.
A method for characterizing phenotypic changes in highly variable cell populations and its application to high content screening of Arabidopsis thaliana protoplasts.
Cytometry A. 2017 Apr;91(4):326-335.
2017
Zhang, Z., Tucker, E., Hermann, M, Laux, T.
A molecular framework for the embryonic initiation of shoot meristem stem cells. Developmental Cell
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2017
Renault, H., A. Alber, N.A. Horst, A.B. Lopes, E.A. Fich, L. Kriegshauser, G. Wiedemann, P. Ullmann, L. Herrgott, M. Erhardt, E. Pineau, J. Ehlting, M. Schmitt, J.K.C. Rose, R. Reski, D. Werck-Reichhart
A phenol-enriched cuticle is ancestral to lignin evolution in land plants.
Nature Communications 8, 14713.
2017
Pazzagli C, He Y, Busch H, Esser P, Kiritsi D, Gache Y, Bruckner-Tuderman L, Boerries M, Has C.
Absence of the integrin α3 subunit induces an activated phenotype in human keratinocytes.
J Invest Dermatol 137:1387-1391, 2017
2017
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The FERM protein EPB41L5 regulates actomyosin contractility and focal adhesion formation to maintain the kidney filtration barrier.
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2018
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CXCL12 and MYC control energy metabolism to support adaptive responses after kidney injury
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Development 2019 146: dev176107
2019
Aspernig H, Heimbucher T, Qi W, Gangurde D, Curic S, Yan Y, Donner von Gromoff E, Baumeister R, Thien A.
Mitochondrial Perturbations Couple mTORC2 to Autophagy in C. elegans
Cell Rep. 2019 Nov 5;29(6):1399-1409.e5.
2019
Jordão MJC, Sankowski R, Brendecke SM, Sagar, Locatelli G, Tai YH, Tay TL, Schramm E, Armbruster S, Hagemeyer N, Groß O, Mai D, Çiçek Ö, Falk T, Kerschensteiner M, Grün D, Prinz M.
Single-cell profiling identifies myeloid cell subsets with distinct fates during neuroinflammation
Cell Dynamics in WOX5-Overexpressing Root Tips: The Impact of Local Auxin Biosynthesis.
Front Plant Sci. 2020 Oct 22;11:560169.
2020
Teale WD, Pasternak T, Dal Bosco C, Dovzhenko A, Kratzat K, Bildl W, Schwörer M, Falk T, Ruperti B, V Schaefer J, Shahriari M, Pilgermayer L, Li X, Lübben F, Plückthun A, Schulte U, Palme K.
Flavonol-mediated stabilization of PIN efflux complexes regulates polar auxin transport.
EMBO J. 2021 Jan 4;40(1):e104416. doi
2020
Schummer A, Maier R, Gabay-Maskit S, Hansen T, Mühlhäuser WWD, Suppanz I, Fadel A, Schuldiner M, Girzalsky W, Oeljeklaus S, Zalckvar E, Erdmann R, Warscheid B.
Pex14p Phosphorylation Modulates Import of Citrate Synthase 2 Into Peroxisomes in Saccharomyces cerevisiae.
Front Cell Dev Biol. 2020 Sep 15;8:549451.
2020
Estrada Mallarino L, Engel C, Ilık İA, Maticzka D, Heyl F, Müller B, Yakulov TA, Dengjel J, Backofen R, Akhtar A, Walz G.
Nephronophthisis gene products display RNA-binding properties and are recruited to stress granules.
Sci Rep. 2020 Sep 29;10(1):15954.
2020
Epting D, Senaratne LDS, Ott E, Holmgren A, Sumathipala D, Larsen SM, Wallmeier J, Bracht D, Frikstad KM, Crowley S, Sikiric A, Barøy T, Käsmann-Kellner B, Decker E, Decker C, Bachmann N, Patzke S, Phelps IG, Katsanis N, Giles R, Schmidts M, Zucknick M, Lienkamp SS, Omran H, Davis EE, Doherty D, Strømme P, Frengen E, Bergmann C, Misceo D.
Loss of CBY1 results in a ciliopathy characterized by features of Joubert syndrome.
Hum Mutat. 2020 Dec;41(12):2179-2194.
2020
Pasternak T, Palme K, Paponov IA.
Glutathione Enhances Auxin Sensitivity in Arabidopsis Roots.
Biomolecules. 2020 Nov 13;10(11):1550.
2020
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Sci Rep. 2020;10(1):9752. Published 2020 Jun 16.
2020
Darkow E, Rog-Zielinska EA, Madl J, et al.
The Lectin LecA Sensitizes the Human Stretch-Activated Channel TREK-1 but Not Piezo1 and Binds Selectively to Cardiac Non-myocytes.
Front Physiol. 2020;11:457. Published 2020 May 15
2020
Thuenauer R, Landi A, Trefzer A, Altmann S, Wehrum S, Eierhoff T, Diedrich B, Dengjel J, Nyström A, Imberty A, Römer W.
The Pseudomonas aeruginosa Lectin LecB Causes Integrin Internalization and Inhibits Epithelial Wound Healing.
mBio. 2020 Mar 10;11(2):e03260-19.
2020
Ketterer S, Mitschke J, Ketscher A, et al.
Cathepsin D deficiency in mammary epithelium transiently stalls breast cancer by interference with mTORC1 signaling.
Nat Commun. 2020;11(1):5133. Published 2020 Oct 12.
2020
Hartl, F.A., Beck-Garcìa, E., Woessner, N.M. et al.
Noncanonical binding of Lck to CD3ε promotes TCR signaling and CAR function.
Nat Immunol 21, 902–913 (2020).
2020
Wipa, P., Paensuwan, P., Ngoenkam, J., Woessner, N. M., Minguet, S., Schamel, W. W., & Pongcharoen, S.
Actin polymerization regulates recruitment of Nck to CD3ε upon T-cell receptor triggering.
Immunology, 159(3), 298–308.
2021
Eriksson, D., Heiland, M., Schneider, A. & Diester, I.
Distinct dynamics of neuronal activity during concurrent motor planning and execution.
Nat Commun. 2021 Sep 10;12(1):5390
2021
Alexia Tasca, Martin Helmstädter, Magdalena Maria Brislinger, Maximilian Haas, Brian Mitchell, Peter Walentek,
Notch signaling induces either apoptosis or cell fate change in multiciliated cells during mucociliary tissue remodeling,
Developmental Cell,Volume 56, Issue 4,2021
2021
Groß M, et al.
Rubella vaccine-induced granulomas are a novel phenotype with incomplete penetrance of genetic defects in cytotoxicity
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2021
Vigano, M. A., Ell, C. M., Kustermann, M., Aguilar, G., Matsuda, S., Zhao, N., Stasevich, T. J., Affolter, M., & Pyrowolakis, G.
Protein manipulation using single copies of short peptide tags in cultured cells and in Drosophila melanogaster.
Development (2021) 148 (6): dev191700.
2021
Pagni M, Haikala V, Oberhauser V, Meyer PB, Reiff DF, Schnaitmann C.
Interaction of “chromatic” and “achromatic” circuits in Drosophila color opponent processing.
Curr Biol. 2021 Apr 26;31(8):1687-1698.e4.
2021
Forlani, G., & Di Ventura, B.
A light way for nuclear cell biologists.
Journal of biochemistry, 169(3), 273–286.
2021
Romano E, Baumschlager A, Akmeriç EB, Palanisamy N, Houmani M, Schmidt G, Öztürk MA, Ernst L, Khammash M, Di Ventura B.
Engineering AraC to make it responsive to light instead of arabinose.
Nat Chem Biol (2021)
2021
Ochoa-Fernandez, R., Abel, N.B., Wieland, FG. et al.
Optogenetic control of gene expression in plants in the presence of ambient white light.
Nat Methods 17, 717–725 (2020).
2021
Carla Brillada, Ooi-Kock Teh, Franck Anicet Ditengou, Chil-Woo Lee, Till Klecker, Bushra Saeed, Giulia Furlan, Marco Zietz, Gerd Hause, Lennart Eschen-Lippold, Wolfgang Hoehenwarter, Justin Lee, Thomas Ott, Marco Trujillo,
Exocyst subunit Exo70B2 is linked to immune signaling and autophagy,
The Plant Cell, Volume 33, Issue 2, February 2021, Pages 404–419,
2021
Hartl FA, Ngoenkam J, Beck-Garcia E, et al.
Cooperative Interaction of Nck and Lck Orchestrates Optimal TCR Signaling.
Cells. 2021;10(4):834. Published 2021 Apr 7.
2021
Brandel A, Aigal S, Lagies S, et al. Cell Mol Life Sci. 2021;78(7):3637-3656.
The Gb3-enriched CD59/flotillin plasma membrane domain regulates host cell invasion by Pseudomonas aeruginosa.
Cell Mol Life Sci. 2021;78(7):3637-3656.
2021
Omidvar R, Ayala YA, Brandel A, Hasenclever L, Helmstädter M, Rohrbach A, Römer W, Madl J.
Quantification of nanoscale forces in lectin-mediated bacterial attachment and uptake into giant liposomes.
Nanoscale, 2021,13, 4016-4028
2021
Sha Tang, Mojgan Shahriari, Jishan Xiang, Taras Pasternak, Anna Igolkina, Somayeh Aminizade, Hui Zhi, Yuanzhu Gao, Farshad Roodbarkelari, Yi Sui, Guanqing Jia, Chuanyin Wu, Xugang Li, Georgy Meshcheryakov, Maria Samsonova, Xianmin Diao, Klaus Palme, View ORCID ProfileWilliam Teale
The role of AUX1 during lateral root development in the domestication of the model C4 grass Setaria italica
Journal of Experimental Botany, Volume 73, Issue 7, 5 April 2022, Pages 2021–2034
2021
Irina Kneuper, William Teale, Jonathan Edward Dawson, Ryuji Tsugeki, Eleni Katifori, Klaus Palme, Franck Anicet Ditengou
Auxin biosynthesis and cellular efflux act together to regulate leaf vein patterning
Journal of Experimental Botany, Volume 72, Issue 4, 24 February 2021, Pages 1151–1165,
2021
Liang P, Schmitz C, Lace B, Ditengou FA, Su C, Schulze E, Knerr J, Grosse R, Keller J, Libourel C, Delaux PM, Ott T.
Formin-mediated bridging of cell wall, plasma membrane, and cytoskeleton in symbiotic infections of Medicago truncatula.
Curr Biol. 2021 Apr 23:S0960-9822(21)00480-2.
2021
Ganner A, Gehrke C, Klein M, Thegtmeier L, Matulenski T, Wingendorf L, Wang L, Pilz F, Greidl L, Meid L, Kotsis F, Walz G, Frew IJ, Neumann-Haefelin E.
VHL suppresses RAPTOR and inhibits mTORC1 signaling in clear cell renal cell carcinoma.
Sci Rep. 2021 Jul 21;11(1):14827.
2021
Lauterwasser, J., Fimm-Todt, F., Oelgeklaus, A., Schreiner, A., Funk, K., Falquez-Medina, H., Klesse, R., Jahreis, G., Zerbes, R. M., O’Neill, K., van der Laan, M., Luo, X., & Edlich, F.
Hexokinases inhibit death receptor-dependent apoptosis on the mitochondria.
Proceedings of the National Academy of Sciences of the United States of America, 2021 Aug 17;118(33):e2021175118.
2021
Lohner P, Zmyslia M, Thurn J, Pape JK, Gerasimaite R, Keller-Findeisen J, Groeer S, Deuringer B, Süss R, Walther A, Hell SW, Lukinavicius G, Hugel T, Jessen-Trefzer C.
Inside a Shell – Organometallic Catalysis Inside Encapsulin Nanoreactors.
Angew Chem Int Ed Engl. 2021 Aug 21.
2021
Eva A. Rog-Zielinska, Marina Scardigli, Remi Peyronnet, Callum M. Zgierski-Johnston, Joachim Greiner, Josef Madl, Eileen T. O’Toole, Mary Morphew, Andreas Hoenger, Leonardo Sacconi, Peter Kohl
Rubio, T., Weyershaeuser, J., Montero, M.G. et al.
The phosphatase PRL-3 affects intestinal homeostasis by altering the crypt cell composition.
J Mol Med 99, 1413–1426 (2021).
2021
Qi, W., Gromoff, E., Xu, F., Zhao, Q., Yang, W., Pfeifer, D., Maier, W., Long, L., & Baumeister, R.
The secreted endoribonuclease ENDU-2 from the soma protects germline immortality in C. elegans.
Nature communications, 12(1), 1262.
2021
Siukstaite, L., Imberty, A., & Römer, W.
Structural Diversities of Lectins Binding to the Glycosphingolipid Gb3.
Front. Mol. Biosci., 26 July 2021
2021
Lin, J. D., Chu, Y. H., Nath, S., & Schachtrup, C.
Fibrinogen triggered signaling pathways modify stem cell behavior in central nervous system disease.
Neural regeneration research, 16(6), 1196–1197
2021
Schneider, N., Wieland, F. G., Kong, D., Fischer, A., Hörner, M., Timmer, J., Ye, H., & Weber, W.
Liquid-liquid phase separation of light-inducible transcription factors increases transcription activation in mammalian cells and mice.
Science advances, 7(1) 2021
2021
Fruzsina Kotsis, Heike Janusch, Yujie Li, Amandine Viau, Daniel Epting, Albrecht Kramer-Zucker, Gerd Walz, Roland Nitschke, Esben Lorentzen, Athina Ganner, Elke Neumann-Haefelin, E. Wolfgang Kuehn, Christopher Boehlke
Ift88, but not Kif3a, is required for establishment of the periciliary membrane compartment
Biochemical and Biophysical Research Communications,
2021
Boehm U, Nelson G, Brown CM, Bagley S, Bajcsy P, Bischof J, Dauphin A, Dobbie IM, Eriksson JE, Faklaris O, Fernandez-Rodriguez J, Ferrand A, Gelman L, Gheisari A, Hartmann H, Kukat C, Laude A, Mitkovski M, Munck S, North AJ, Rasse TM, Resch-Genger U, Schuetz LC, Seitz A, Strambio-De-Castillia C, Swedlow JR, Nitschke R.
QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy.
Nat Methods. 2021 Dec;18(12):1423-1426.
2021
Hernández-Reyes C, Lichtenberg E, Keller J, Delaux PM, Ott T, Schenk ST
NIN-Like Proteins; interesting Players in Rhizobia-Induced Nitrate Signaling Response during Interaction with Non-Legume Host Arabidopsis thaliana.
Mol Plant Microbe Interact. 2021 Nov 23.
2021
Peintner, L., Venkatraman, A., Waeldin, A., Hofherr, A., Busch, T., Voronov, A., Viau, A., Kuehn, E. W., Köttgen, M., & Borner, C.
Loss of PKD1/polycystin-1 impairs lysosomal activity in a CAPN (calpain)-dependent manner.
Autophagy, 17(9), 2384–2400.
2021
Getwan, M., Hoppmann, A., Schlosser, P., Grand, K., Song, W., Diehl, R., Schroda, S., Heeg, F., Deutsch, K., Hildebrandt, F., Lausch, E., Köttgen, A., & Lienkamp, S. S.
Ttc30a affects tubulin modifications in a model for ciliary chondrodysplasia with polycystic kidney disease.
Proceedings of the National Academy of Sciences of the United States of America, 118(39), e2106770118.
2021
Schölch S, Schäfer JL, Meckel T, Brandstetter T, Biesalski M, Rühe J.
Diazo-Based Copolymers for the Wet Strength Improvement of Paper Based on Thermally Induced CH-Insertion Cross-Linking.
Biomacromolecules. 2021 Jul 12;22(7):2864-2873.
2021
Siukstaite L, Rosato F, Mitrovic A, Müller PF, Kraus K, Notova S, Imberty A, Römer W.
The Two Sweet Sides of Janus Lectin Drive Crosslinking of Liposomes to Cancer Cells and Material Uptake.
Toxins (Basel). 2021 Nov 9;13(11):792.
2021
Elena Kozgunova, Mari W. Yoshida, Ralf Reski, Gohta Goshim
Spindle position dictates division site during asymmetric cell division in moss
Toxins. 2021; 13(11):792.
2021
Hammer M, Huisman M, Rigano A, Boehm U, Chambers JJ, Gaudreault N, North AJ, Pimentel JA, Sudar D, Bajcsy P, Brown CM, Corbett AD, Faklaris O, Lacoste J, Laude A, Nelson G, Nitschke R, Farzam F, Smith CS, Grunwald D, Strambio-De-Castillia C.
Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model.
Nat Methods. 2021 Dec;18(12):1427-1440
2021
Rigano A, Ehmsen S, Öztürk SU, Ryan J, Balashov A, Hammer M, Kirli K, Boehm U, Brown CM, Bellve K, Chambers JJ, Cosolo A, Coleman RA, Faklaris O, Fogarty KE, Guilbert T, Hamacher AB, Itano MS, Keeley DP, Kunis S, Lacoste J, Laude A, Ma WY, Marcello M, Montero-Llopis P, Nelson G, Nitschke R, Pimentel JA, Weidtkamp-Peters S, Park PJ, Alver BH, Grunwald D, Strambio-De-Castillia C.
Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications.
Nat Methods. 2021 Dec;18(12):1489-1495.
2021
Nelson G, Boehm U, Bagley S, Bajcsy P, Bischof J, Brown CM, Dauphin A, Dobbie IM, Eriksson JE, Faklaris O, Fernandez-Rodriguez J, Ferrand A, Gelman L, Gheisari A, Hartmann H, Kukat C, Laude A, Mitkovski M, Munck S, North AJ, Rasse TM, Resch-Genger U, Schuetz LC, Seitz A, Strambio-De-Castillia C, Swedlow JR, Alexopoulos I, Aumayr K, Avilov S, Bakker GJ, Bammann RR, Bassi A, Beckert H, Beer S, Belyaev Y, Bierwagen J, Birngruber KA, Bosch M, Breitlow J, Cameron LA, Chalfoun J, Chambers JJ, Chen CL, Conde-Sousa E, Corbett AD, Cordelieres FP, Nery ED, Dietzel R, Eismann F, Fazeli E, Felscher A, Fried H, Gaudreault N, Goh WI, Guilbert T, Hadleigh R, Hemmerich P, Holst GA, Itano MS, Jaffe CB, Jambor HK, Jarvis SC, Keppler A, Kirchenbuechler D, Kirchner M, Kobayashi N, Krens G, Kunis S, Lacoste J, Marcello M, Martins GG, Metcalf DJ, Mitchell CA, Moore J, Mueller T, Nelson MS, Ogg S, Onami S, Palmer AL, Paul-Gilloteaux P, Pimentel JA, Plantard L, Podder S, Rexhepaj E, Royon A, Saari MA, Schapman D, Schoonderwoert V, Schroth-Diez B, Schwartz S, Shaw M, Spitaler M, Stoeckl MT, Sudar D, Teillon J, Terjung S, Thuenauer R, Wilms CD, Wright GD, Nitschke R.
QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy.
Spatiotemporal sequence of mesoderm and endoderm lineage segregation during mouse gastrulation.
Development. 2021 Jan 7;148(1
2021
Boudkkazi S, Schwenk J, Nakaya N, Brechet A, Kollewe A, Harada H, Bildl W, Kulik A, Dong L, Sultana A, Zolles G, Schulte U, Tomarev S, Fakler B.
A Noelin-organized extracellular network of proteins required for constitutive and context-dependent anchoring of AMPA-receptors.
Neuron. 2023 Aug 16;111(16):2544-2556.e9.
2021
Giovannoni M, Marti L, Ferrari S, Tanaka-Takada N, Maeshima M, Ott T, De Lorenzo G, Mattei B
The plasma membrane-associated Ca2+– binding protein PCaP1 is required for oligogalacturonide and flagellin-induced priming and immunity
Plant Cell Environ. 2021 Sep;44(9):3078-3093.
2021
Rich MK, Vigneron N, Libourel C, Keller J, Xue L, Hajheidari M, Radhakrishnan GV, Le Ru A, Issa Diop S, Potente G, Conti E, Duijsings D, Batut A, Le Faouder P, Kodama K, Kyozuka J, Sallet E, Bécard G, Rodriguez-Franco M, Ott T, Bertrand-Michel J, Oldroyd GED, Szövényi P, Bucher M, Delaux PM
Lipid exchanges drove the evolution of mutualism during plant terrestrialization
Science; 372 (6544): 864-868
2021
Montiel J, Reid D, Grønbæk TH, Benfeldt CM, James EK, Ott T, Ditengou FA, Nadzieja M, Kelly S, Stougaard J.
Distinct signaling routes mediate intercellular and intracellular rhizobial infection in Lotus japonicus.
Plant Physiol. 2021 Apr 2;185(3):1131-1147.
2021
Özdemir B, Reski R.
Automated and semi-automated enhancement, segmentation and tracing of cytoskeletal networks in microscopic images: A review.
Comput Struct Biotechnol J. 2021 Apr 15;19:2106-2120.
2022
Jünger F, Ruh D, Strobel D, Michiels R, Huber D, Brandel A, Madl J, Gavrilov A, Mihlan M, Daller CC, Rog-Zielinska EA, Römer W, Lämmermann T, Rohrbach A.
100 Hz ROCS microscopy correlated with fluorescence reveals cellular dynamics on different spatiotemporal scales.
Nat Commun. 2022 Apr 1;13(1):1758.
2022
Milosavljevic J, Lempicki C, Lang K, Heinkele H, Kampf LL, Leroy C, Chen M, Gerstner L, Spitz D, Wang M, Knob AU, Kayser S, Helmstädter M, Walz G, Pollak MR, Hermle T.
Nephrotic Syndrome Gene TBC1D8B Is Required for Endosomal Maturation and Nephrin Endocytosis in Drosophila.
J Am Soc Nephrol. 2022 Dec;33(12):2174-2193.
2022
Lang K, Milosavljevic J, Heinkele H, Chen M, Gerstner L, Spitz D, Kayser S, Helmstädter M, Walz G, Köttgen M, Spracklen A, Poulton J, Hermle T.
Selective endocytosis controls slit diaphragm maintenance and dynamics in Drosophila nephrocytes.
Elife. 2022 Jul 25;11:e79037.
2022
Lea Gerstner, Mengmeng Chen, Lina L. Kampf, Julian Milosavljevic, Konrad Lang, Ronen Schneider, Friedhelm Hildebrandt, Martin Helmstädter, Gerd Walz, Tobias Hermle,
Inhibition of endoplasmic reticulum stress signaling rescues cytotoxicity of human apolipoprotein-L1 risk variants in Drosophila.
Kidney Int. 2022 Jun;101(6):1216-1231
2022
Klingbeil K, Nguyen TQ, Fahrner A, Guthmann C, Wang H, Schoels M, Lilienkamp M, Franz H, Eckert P, Walz G, Yakulov TA.
Corpuscles of Stannius development requires FGF signaling,
Dev Biol. 2022 Jan;481:160-171.
2022
Westphal M, Panza P, Kastenhuber E, Wehrle J, Driever W.
Wnt/β-catenin signaling promotes neurogenesis in the diencephalospinal dopaminergic system of embryonic zebrafish.
Sci Rep. 2022 Jan 19;12(1):1030.
2022
Flum, M., Dicks, S., Teng, YH. et al.
Canonical TGFβ signaling induces collective invasion in colorectal carcinogenesis through a Snail1- and Zeb1-independent partial EMT.
Oncogene 41, 1492–1506 (2022)
2022
Gerstner L, Chen M, Kampf LL, Milosavljevic J, Lang K, Schneider R, Hildebrandt F, Helmstädter M, Walz G, Hermle T.
Inhibition of endoplasmic reticulum stress signaling rescues cytotoxicity of human apolipoprotein-L1 risk variants in Drosophila.
Kidney Int. 2022 Jun;101(6):1216-1231
2022
Spitz D, Comas M, Gerstner L, Kayser S, Helmstädter M, Walz G, Hermle T.
mTOR-Dependent Autophagy Regulates Slit Diaphragm Density in Podocyte-like Drosophila Nephrocytes
Cells. 2022 Jul 2;11(13):2103
2022
Tong Y, Pfeiffer L, Serchov T, Coenen VA, Döbrössy MD.
Optogenetic stimulation of ventral tegmental area dopaminergic neurons in a female rodent model of depression: The effect of different stimulation patterns.
J Neurosci Res. 2022 Mar;100(3):897-911.
2022
Faklaris O, Bancel-Vallée L, Dauphin A, Monterroso B, Frère P, Geny D, Manoliu T, de Rossi S, Cordelières FP, Schapman D, Nitschke R, Cau J, Guilbert T.
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J Cell Biol. 2022 Nov 7;221(11):e202107093. Epub 2022 Sep 29.
2022
Kozgunova E, Yoshida MW, Reski R, Goshima G.
Spindle motility skews division site determination during asymmetric cell division in Physcomitrella.
Nat Commun. 2022 May 5;13(1):2488.
2022
Hernández-Reyes C, Lichtenberg E, Keller J, Delaux PM, Ott T, Schenk ST.
NIN-Like Proteins: Interesting Players in Rhizobia-Induced Nitrate Signaling Response During Interaction with Non-Legume Host Arabidopsis thaliana.
Notova S, Bonnardel F, Rosato F, Siukstaite L, Schwaiger J, Lim JH, Bovin N, Varrot A, Ogawa Y, Römer W, Lisacek F, Imberty A.
The choanoflagellate pore-forming lectin SaroL-1 punches holes in cancer cells by targeting the tumor-related glycosphingolipid Gb3.
Commun Biol. 2022 Sep 12;5(1):954.
2022
Thuenauer R, Kühn K, Guo Y, Kotsis F, Xu M, Trefzer A, Altmann S, Wehrum S, Heshmatpour N, Faust B, Landi A, Diedrich B, Dengjel J, Kuehn EW, Imberty A, Römer W.
The Lectin LecB Induces Patches with Basolateral Characteristics at the Apical Membrane to Promote Pseudomonas aeruginosa Host Cell Invasion.
mBio. 2022 Jun 28;13(3):e0081922.
2022
Brillada C, Trujillo M.
E2 ubiquitin-conjugating enzymes (UBCs): drivers of ubiquitin signalling in plants.
Essays Biochem. 2022 Aug 5;66(2):99-110.
2022
Yasunaga T, Wiegel J, Bergen MD, Helmstädter M, Epting D, Paolini A, Çiçek Ö, Radziwill G, Engel C, Brox T, Ronneberger O, Walentek P, Ulbrich MH, Walz G.
Microridge-like structures anchor motile cilia.
Nat Commun. 2022 Apr 19;13(1):2056.
2022
Hörner M, Weber W.
Spatially Defined Gene Delivery into Native Cells with the Red Light-Controlled OptoAAV Technology.
bioRxiv [Preprint]. 2023 Feb 15:2023.02.15.528675.
2023
Waidmann S, Béziat C, Ferreira Da Silva Santos J, Feraru E, Feraru MI, Sun L, Noura S, Boutté Y, Kleine-Vehn J
Endoplasmic reticulum stress controls PIN-LIKES abundance and thereby growth adaptation.
Proc Natl Acad Sci U S A. 2023 Aug;120(31):
2023
Sivabalasarma S, de Sousa Machado JN, Albers SV, Jarrell KF.
Archaella Isolation.
Methods Mol Biol. 2023;2646:183-195.
2023
Raute K, Strietz J, Parigiani MA, Andrieux G, Thomas OS, Kistner KM, Zintchenko M, Aichele P, Hofmann M, Zhou H, Weber W, Boerries M, Swamy M, Maurer J, Minguet S.
Breast Cancer Stem Cell-Derived Tumors Escape from γδ T-cell Immunosurveillance In Vivo by Modulating γδ T-cell Ligands.
Real-time monitoring of cell surface protein arrival with split luciferases.
Traffic. 2023 Jul 4.
2023
Xu M, Antonova M, Salavei P, Illek K, Meléndez AV, Omidvar R, Thuenauer R, Makshakova O, Römer W.
Dimeric Lectin Chimeras as Novel Candidates for Gb3-Mediated Transcytotic Drug Delivery through Cellular Barriers
Pharmaceutics. 2023 Jan 9;15(1):225.
2023
Xu F, Li R, von Gromoff ED, Drepper F, Knapp B, Warscheid B, Baumeister R, Qi W.
Reprogramming of the transcriptome after heat stress mediates heat hormesis in Caenorhabditis elegans.
Nat Commun. 2023 Jul 13;14(1):4176.
2023
Kaltenbach L, Martzloff P, Bambach SK, Aizarani N, Mihlan M, Gavrilov A, Glaser KM, Stecher M, Thünauer R, Thiriot A, Heger K, Kierdorf K, Wienert S, von Andrian UH, Schmidt-Supprian M, Nerlov C, Klauschen F, Roers A, Bajénoff M, Grün D, Lämmermann T
Slow integrin-dependent migration organizes networks of tissue-resident mast cells.
Nat Immunol 24, 915–924 (2023).
2023
Su C, Zhang G, Rodriguez-Franco M, Hinnenberg R, Wietschorke J, Liang P, Yang W, Uhler L, Li X, Ott T.
Transcellular progression of infection threads in Medicago truncatula roots is associated with locally confined cell wall modifications.
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2023
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